Browse Element(s) Details


OsAffx.24934.1.S1_at

Description tigr:9631.m00052
TID=OsAffx.24934.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0148011/11hypothetical protein
LOC_Os03g0143011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01410NANA3+272015..273263Leucine Rich Repeat family protein
LOC_Os03g01420Os.18484.1.S1_at5/113+274095..276245expressed protein
LOC_Os03g01430OsAffx.24934.1.S1_at11/113+280283..281740hypothetical protein
LOC_Os03g01450OsAffx.24935.1.S1_at7/113+287418..288747hypothetical protein
LOC_Os03g01460OsAffx.22275.1.S1_at11/113+290232..291020hypothetical protein
LOC_Os03g01470Os.43909.1.S1_at11/113+292151..293666expressed protein
LOC_Os03g01480OsAffx.24934.1.S1_at11/113+294441..295900hypothetical protein
LOC_Os03g01490Os.34626.1.S1_a_at10/113+300759..301988expressed protein
LOC_Os03g01500OsAffx.10059.1.S1_at11/113+303205..304327hypothetical protein
LOC_Os03g01520OsAffx.22274.1.S1_at9/113+313838..317056hypothetical protein
LOC_Os03g01520OsAffx.22274.2.S1_at1/113+313838..317056hypothetical protein
LOC_Os03g01530Os.45920.1.S1_at11/113+318345..320140Tubulin beta-2 chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24934.1.S1_at--1077--2152Chr03:280344..280478 (25 bp)
ACAGCGACGATGTGGCACTGGGCTC
LOC_Os03g01430
OsAffx.24934.1.S1_at--490--7992Chr03:280508..280528 (21 bp)
GGATGAAGTTTCATGCACCGGATGA
LOC_Os03g01430
OsAffx.24934.1.S1_at--238--5093Chr03:287308..287327 (20 bp)
GCACCGGATGAATCAGGTTCGCTGA
NONE
OsAffx.24934.1.S1_at--684--1013Chr03:287317..287341 (25 bp)
AGGTTCGCTGACTTCGCATGACCCA
NONE
OsAffx.24934.1.S1_at--220--692Chr03:281595..281619 (25 bp)
ATGACCCATCCATCAGGTGTTTGTT
LOC_Os03g01430
OsAffx.24934.1.S1_at--237--1052Chr03:281609..281633 (25 bp)
AGGTGTTTGTTGGAGATCTTGCATT
LOC_Os03g01430
OsAffx.24934.1.S1_at--70--8832Chr03:281616..281640 (25 bp)
TGTTGGAGATCTTGCATTTGGTGTT
LOC_Os03g01430
OsAffx.24934.1.S1_at--725--7753Chr03:287374..287398 (25 bp)
GGTGTTGCTCGCTTTGTATACATGC
NONE
OsAffx.24934.1.S1_at--221--3532Chr03:281655..281679 (25 bp)
CATGCGTGGTTCTTTTATTAGCTAC
LOC_Os03g01430
OsAffx.24934.1.S1_at--893--10192Chr03:281670..281694 (25 bp)
TATTAGCTACTGGATGGCATGAGAG
LOC_Os03g01430
OsAffx.24934.1.S1_at--75--4992Chr03:281686..281710 (25 bp)
GCATGAGAGGTACAGGGTTTCTTAT
LOC_Os03g01430
Target Sequence 
ACAGCGACGATGTGGCACTGGGCTCGGCGGTGACAGATTGGGTGGCGCTGAGGAGGATGAAGTTTCATGCACCGGATGAA
TCAGGTTCGCTGACTTCGCATGACCCATCCATCAGGTGTTTGTTGGAGATCTTGCATTTGGTGTTGCTCGCTTTGTATAC
ATGCGTGGTTCTTTTATTAGCTACTGGATGGCATGAGAGGTACAGGGTTTCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis