Browse Element(s) Details


OsAffx.2494.1.S1_at

Description tigr:9630.m00284
TID=OsAffx.2494.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g038009/11expressed protein
LOC_Os11g313001/11hypothetical protein
LOC_Os01g228301/11retrotransposon protein, putative, unclassified
LOC_Os12g142801/11hypothetical protein
LOC_Os10g064001/11hypothetical protein
LOC_Os07g272001/11retrotransposon protein, putative, unclassified
LOC_Os02g257401/11retrotransposon protein, putative, unclassified
LOC_Os10g111801/11hypothetical protein
LOC_Os06g189401/11hypothetical protein
LOC_Os03g268801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03760Os.17524.1.S1_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03760Os.17524.2.S1_x_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03770NANA2+1589008..1589945hypothetical protein
LOC_Os02g03780OsAffx.11881.1.S1_at11/112+1593186..1593406hypothetical protein
LOC_Os02g03790Os.39971.1.A1_at11/112+1594601..1599297expressed protein
LOC_Os02g03800OsAffx.2494.1.S1_at9/112+1600394..1601422expressed protein
LOC_Os02g03810OsAffx.24088.1.S1_at11/112+1601977..1603063F-box domain containing protein
LOC_Os02g03820Os.54258.1.S1_at11/112+1603372..1607211expressed protein
LOC_Os02g03830Os.20156.1.S1_at5/112+1611135..1611557expressed protein
LOC_Os02g03840Os.17347.1.S1_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.17347.1.S2_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.21055.1.A1_at4/112+1617326..1630163expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2494.1.S1_at--810--3831Chr02:1600599..1600623 (25 bp)
CTGCTGCATGTTCATACTGCTGTTT
LOC_Os02g03800
OsAffx.2494.1.S1_at--129--6751Chr02:1600608..1600632 (25 bp)
GTTCATACTGCTGTTTCCAGGCCAG
LOC_Os02g03800
OsAffx.2494.1.S1_at--1089--1291Chr02:1600666..1600690 (25 bp)
AGATGCTACCACGAATGCTTGCCCA
LOC_Os02g03800
OsAffx.2494.1.S1_at--328--9251Chr02:1600714..1600738 (25 bp)
TCCTTCTGCAAGGTGTTCTGCGGCA
LOC_Os02g03800
OsAffx.2494.1.S1_at--64--9151Chr02:1600744..1600768 (25 bp)
TGCGTCTTCAATCCAGTTCACAATT
LOC_Os02g03800
OsAffx.2494.1.S1_at--480--6751Chr02:1600759..1600783 (25 bp)
GTTCACAATTGCACTAGCACCGATG
LOC_Os02g03800
OsAffx.2494.1.S1_at--294--4171Chr02:1600806..1600830 (25 bp)
CGCCGGAGACGACTGCAGAATGATC
LOC_Os02g03800
OsAffx.2494.1.S1_at--894--7110Chr12:8133100..8133247 (24 bp)
ATGATCTGCCTGAACTCCTTCTGCG
LOC_Os12g14280
OsAffx.2494.1.S1_at--675--9131Chr02:1600846..1600870 (25 bp)
TGCGGCGAGGCAGCTACAGGCTACT
LOC_Os02g03800
OsAffx.2494.1.S1_at--817--9851NONE
TACAGGCTACTTGTTCAAATATTCT
NONE
OsAffx.2494.1.S1_at--680--3111Chr02:1601534..1601558 (25 bp)
AATATTCTCGTATTCTCTGCGAGCA
NONE
Target Sequence 
CTGCTGCATGTTCATACTGCTGTTTCCAGGCCAGCAGCAGCAGGTGGCTGCCATGTCCAGGATCTGCAGATGCTACCACG
AATGCTTGCCCAACTGCGGCCTGCGCAATTCTCGCTCCTTCTGCAAGGTGTTCTGCGGCAGCTGCTGCGTCTTCAATCCA
GTTCACAATTGCACTAGCACCGATGCGGCGGCCGCGGCGCCAGCGATCGCCGGAGACGACTGCAGAATGATCTGCCTGAA
CTCCTTCTGCGGCGAGGCAGCTACAGGCTACTTGTTCAAATATTCTCGTATTCTCTGCGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis