Browse Element(s) Details


OsAffx.24961.1.S1_at

Description tigr:9631.m00346
TID=OsAffx.24961.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0433011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04300Os.26758.1.A1_a_at11/113+1949407..1958621Ankyrin repeat protein, chloroplast precursor, putative, expressed
LOC_Os03g04310Os.5860.1.S1_at11/113+1962636..1964778basic helix-loop-helix, putative, expressed
LOC_Os03g04320Os.53344.1.S1_at10/113+1969707..1975130hypothetical protein
LOC_Os03g04330OsAffx.24961.1.S1_at11/113+1976054..1976536hypothetical protein
LOC_Os03g04340Os.6433.1.S1_at11/113+1982232..198409524-methylenesterol C-methyltransferase 2, putative, expressed
LOC_Os03g04350OsAffx.24962.1.S1_at11/113+1987355..1987722hypothetical protein
LOC_Os03g04350Os.25910.1.S1_s_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04350OsAffx.16321.1.S1_x_at1/113+1987355..1987722hypothetical protein
LOC_Os03g04360Os.50503.1.S1_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360Os.50503.1.S2_at11/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.20487.1.S1_s_at3/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04360OsAffx.11592.1.S1_x_at2/113+1990099..1992643phosphate:H+ symporter family protein, expressed
LOC_Os03g04370Os.55093.1.S1_at11/113+1993159..1993854expressed protein
LOC_Os03g04380Os.51396.1.S1_at11/113+1994068..1994713Complex 1 protein containing protein, expressed
LOC_Os03g04390Os.49142.1.S1_at11/113+1994759..1997434pentatricopeptide, putative, expressed
LOC_Os03g04400Os.47349.1.S1_at9/113+1997847..2001075DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24961.1.S1_at--358--4791Chr03:1976215..1976239 (25 bp)
GCTCCACTGGTTTGCTCCTCCAGGG
LOC_Os03g04330
OsAffx.24961.1.S1_at--777--572Chr03:1976244..1976268 (25 bp)
ATCCACCCATTAGACAGGGTTGGGC
LOC_Os03g04330
OsAffx.24961.1.S1_at--1098--251Chr03:1976331..1976355 (25 bp)
ATATCCTAACAACATTGGGCACAAA
LOC_Os03g04330
OsAffx.24961.1.S1_at--641--2291Chr03:1976355..1976379 (25 bp)
AAATGAGCAGCCGAATCACCAGTGA
LOC_Os03g04330
OsAffx.24961.1.S1_at--986--5231Chr03:1976367..1976391 (25 bp)
GAATCACCAGTGAGCAGCCTAACCG
LOC_Os03g04330
OsAffx.24961.1.S1_at--532--8912Chr03:1976377..1976401 (25 bp)
TGAGCAGCCTAACCGCCGATCGCAT
LOC_Os03g04330
OsAffx.24961.1.S1_at--998--4492Chr03:1976391..1976415 (25 bp)
GCCGATCGCATAAGCCGCACGCGAG
LOC_Os03g04330
OsAffx.24961.1.S1_at--277--4611Chr03:1976411..1976435 (25 bp)
GCGAGCGACGCCTCATTTCCTTTGA
LOC_Os03g04330
OsAffx.24961.1.S1_at--1098--9591Chr03:1976423..1976447 (25 bp)
TCATTTCCTTTGACCTGGATCGGCG
LOC_Os03g04330
OsAffx.24961.1.S1_at--878--7951Chr03:1976439..1976463 (25 bp)
GGATCGGCGCCACGCCATCAATTCG
LOC_Os03g04330
OsAffx.24961.1.S1_at--259--10531Chr03:1976481..1976505 (25 bp)
TTCAGCCTTCACCGAGTCGACCAGA
LOC_Os03g04330
Target Sequence 
GCTCCACTGGTTTGCTCCTCCAGGGGTGGATCCACCCATTAGACAGGGTTGGGCAGCCGGCCCAGCTATGGCCCGCGCCG
CCCCACCCCCTACCCTCCTTGGGCCGTCCTACCACCATATCCTAACAACATTGGGCACAAAAATGAGCAGCCGAATCACC
AGTGAGCAGCCTAACCGCCGATCGCATAAGCCGCACGCGAGCGACGCCTCATTTCCTTTGACCTGGATCGGCGCCACGCC
ATCAATTCGCCTTCGCGGCTTCCCCCTTCAGCCTTCACCGAGTCGACCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis