Browse Element(s) Details


OsAffx.24973.1.S1_at

Description tigr:9631.m00435
TID=OsAffx.24973.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0515011/11hypothetical protein
LOC_Os07g423701/11ZIM motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05080OsAffx.12735.1.S1_x_at11/113+2453439..2453983hypothetical protein
LOC_Os03g05090NANA3+2458525..2458992transposon protein, putative, unclassified
LOC_Os03g05100OsAffx.24970.1.S1_at11/113+2461631..2462449hypothetical protein
LOC_Os03g05110Os.6350.1.S1_at11/113+2466031..2468591Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05120OsAffx.24971.1.S1_at11/113+2471064..2472076hypothetical protein
LOC_Os03g05130NANA3+2473495..2473893hypothetical protein
LOC_Os03g05140OsAffx.3137.1.S1_x_at11/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05140Os.50672.1.S2_x_at1/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05150OsAffx.24973.1.S1_at11/113+2478314..2481211hypothetical protein
LOC_Os03g05160OsAffx.24974.1.S1_x_at11/113+2485241..2486000GATA zinc finger family protein
LOC_Os03g05160OsAffx.24974.1.S1_at11/113+2485241..2486000GATA zinc finger family protein
LOC_Os03g05170OsAffx.24975.1.S1_at11/113+2486752..2487448hypothetical protein
LOC_Os03g05180Os.56558.1.S1_at11/113+2491981..2495345expressed protein
LOC_Os03g05180OsAffx.12737.1.S1_at6/113+2491981..2495345expressed protein
LOC_Os03g05200Os.25246.1.A1_at11/113+2495970..2505071DENN domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24973.1.S1_at--514--551Chr03:2479325..2479349 (25 bp)
ATCCTGGTGGTGGAGCTGTAGCCTG
LOC_Os03g05150
OsAffx.24973.1.S1_at--883--6931Chr03:2479349..2479373 (25 bp)
GTAGGGACTGTAAGATTCTCTTCCA
LOC_Os03g05150
OsAffx.24973.1.S1_at--884--4371Chr03:2480101..2480125 (25 bp)
CCAACAGGGGTTCGCTTCAAATATT
LOC_Os03g05150
OsAffx.24973.1.S1_at--1056--10471Chr03:2481061..2481085 (25 bp)
TTACACAACAAACAACATGATCCTA
LOC_Os03g05150
OsAffx.24973.1.S1_at--918--711Chr03:2481077..2481101 (25 bp)
ATGATCCTAACAATTACTCGCCCAA
LOC_Os03g05150
OsAffx.24973.1.S1_at--361--3131Chr03:2481088..2481112 (25 bp)
AATTACTCGCCCAACTCTGAACCTT
LOC_Os03g05150
OsAffx.24973.1.S1_at--648--9471Chr03:2481103..2481127 (25 bp)
TCTGAACCTTCCCATGTTAGCAATG
LOC_Os03g05150
OsAffx.24973.1.S1_at--739--5531Chr03:2481128..2481152 (25 bp)
GAAACAATTATTGGACCCACCTGGC
LOC_Os03g05150
OsAffx.24973.1.S1_at--791--10411Chr03:2481135..2481159 (25 bp)
TTATTGGACCCACCTGGCAGGCATA
LOC_Os03g05150
OsAffx.24973.1.S1_at--1091--1751Chr03:2481146..2481170 (25 bp)
ACCTGGCAGGCATACATGATACGGA
LOC_Os03g05150
OsAffx.24973.1.S1_at--109--4972Chr07:25349227..25349415 (25 bp)
GCATACATGATACGGAGTATACCAA
LOC_Os07g42370
Target Sequence 
ATCCTGGTGGTGGAGCTGTAGCCTGTAGGGACTGTAAGATTCTCTTCCAGGTTGTCAAATTTGGGGATCTTAACCAACAG
GGGTTCGCTTCAAATATTTTTTTCATTGTGAATTACACAACAAACAACATGATCCTAACAATTACTCGCCCAACTCTGAA
CCTTCCCATGTTAGCAATGGAAACAATTATTGGACCCACCTGGCAGGCATACATGATACGGAGTATACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis