Browse Element(s) Details


OsAffx.24983.1.S1_at

Description tigr:9631.m00479
TID=OsAffx.24983.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0555011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05520OsAffx.12740.1.S1_s_at11/113+2718728..2722222expressed protein
LOC_Os03g05530OsAffx.24981.1.S1_at11/113+2727371..2732402Integral membrane protein DUF6 containing protein, expressed
LOC_Os03g05540OsAffx.24982.1.S1_at11/113+2736847..2741352TPR Domain containing protein, expressed
LOC_Os03g05540Os.22671.1.S1_x_at8/113+2736847..2741352TPR Domain containing protein, expressed
LOC_Os03g05550OsAffx.24983.1.S1_at11/113+2742575..2743267hypothetical protein
LOC_Os03g05560OsAffx.12741.1.S1_at11/113+2750298..2751529Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g05570Os.20060.1.S1_at11/113+2755737..2756880Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24983.1.S1_at--333--371Chr03:2743208..2743232 (25 bp)
ATCAATTTGTAGGTCACCATTCTTG
LOC_Os03g05550
OsAffx.24983.1.S1_at--378--6931Chr03:2743200..2743224 (25 bp)
GTAGGTCACCATTCTTGAGTGGCAA
LOC_Os03g05550
OsAffx.24983.1.S1_at--1007--3831Chr03:2742705..2742729 (25 bp)
CTGCTTCTGCTTCCAAGGTTGCCCT
LOC_Os03g05550
OsAffx.24983.1.S1_at--859--3191Chr03:2742692..2742716 (25 bp)
CAAGGTTGCCCTCGCGATTGCTTTG
LOC_Os03g05550
OsAffx.24983.1.S1_at--723--9071Chr03:2742674..2742698 (25 bp)
TGCTTTGCTTTCTTCCCACTGGGAG
LOC_Os03g05550
OsAffx.24983.1.S1_at--833--3611Chr03:2742663..2742687 (25 bp)
CTTCCCACTGGGAGTTGGACGGTGA
LOC_Os03g05550
OsAffx.24983.1.S1_at--1049--6611Chr03:2742650..2742674 (25 bp)
GTTGGACGGTGATATCCACATGCTC
LOC_Os03g05550
OsAffx.24983.1.S1_at--55--7411Chr03:2742642..2742666 (25 bp)
GTGATATCCACATGCTCCCTAACGG
LOC_Os03g05550
OsAffx.24983.1.S1_at--64--3811Chr03:2742628..2742652 (25 bp)
CTCCCTAACGGCACAAGCATGGCAG
LOC_Os03g05550
OsAffx.24983.1.S1_at--727--2511Chr03:2742622..2742646 (25 bp)
AACGGCACAAGCATGGCAGCAAGCA
LOC_Os03g05550
OsAffx.24983.1.S1_at--252--1491Chr03:2742605..2742629 (25 bp)
AGCAAGCATGTTAAGCGAAGCTCAC
LOC_Os03g05550
Target Sequence 
ATCAATTTGTAGGTCACCATTCTTGAGTGGCAAGAGGTGTTCTGCTTCTGCTTCCAAGGTTGCCCTCGCGATTGCTTTGC
TTTCTTCCCACTGGGAGTTGGACGGTGATATCCACATGCTCCCTAACGGCACAAGCATGGCAGCAAGCATGTTAAGCGAA
GCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis