Browse Element(s) Details


OsAffx.24999.1.S1_at

Description tigr:9631.m00620
TID=OsAffx.24999.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0691011/11Rf1 protein, mitochondrial precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06880Os.15977.1.S1_at11/113+3458553..3461310pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os03g06890OsAffx.24998.1.S1_at11/113+3462464..3464819expressed protein
LOC_Os03g06900OsAffx.10050.1.S1_at11/113+3468980..3479199DNA topoisomerase family protein, expressed
LOC_Os03g06900OsAffx.15517.1.S1_at1/113+3468980..3479199DNA topoisomerase family protein, expressed
LOC_Os03g06910OsAffx.24999.1.S1_at11/113+3481643..3483589Rf1 protein, mitochondrial precursor, putative
LOC_Os03g06920Os.43861.1.S1_at11/113+3484678..3491994SNF2 domain-containing protein, putative, expressed
LOC_Os03g06920OsAffx.14946.1.S1_at1/113+3484678..3491994SNF2 domain-containing protein, putative, expressed
LOC_Os03g06930Os.21068.1.S1_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06930Os.21068.2.S1_x_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06930Os.21068.1.S1_x_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06940Os.13559.1.S1_at11/113+3504226..3510461Beta-galactosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24999.1.S1_at--1--10131Chr03:3482183..3482207 (25 bp)
TATGCATTCTCGTGAAATCTTCCCC
LOC_Os03g06910
OsAffx.24999.1.S1_at--379--2271Chr03:3482169..3482193 (25 bp)
AAATCTTCCCCAATCATGTTACGTA
LOC_Os03g06910
OsAffx.24999.1.S1_at--881--7011Chr03:3482147..3482171 (25 bp)
GTACAGTATCCTAATCGACAGTCAC
LOC_Os03g06910
OsAffx.24999.1.S1_at--1082--1071Chr03:3482067..3482091 (25 bp)
AGGGCATTTTGCCAAACATCATGAC
LOC_Os03g06910
OsAffx.24999.1.S1_at--797--3151Chr03:3482038..3482062 (25 bp)
AATTCCATCATTAAGGGCTATTGCC
LOC_Os03g06910
OsAffx.24999.1.S1_at--905--8291Chr03:3482023..3482047 (25 bp)
GGCTATTGCCGGTCTGGAAATGTTT
LOC_Os03g06910
OsAffx.24999.1.S1_at--314--7751Chr03:3481958..3481982 (25 bp)
GGTGTCACCTGATTTAATTACTTAC
LOC_Os03g06910
OsAffx.24999.1.S1_at--7--5111Chr03:3481895..3481919 (25 bp)
GCACGATGCTTTTAAGTTGCTTAAC
LOC_Os03g06910
OsAffx.24999.1.S1_at--1008--2291Chr03:3481712..3481736 (25 bp)
AAATGGTCATGTCACAGCTGGCAAC
LOC_Os03g06910
OsAffx.24999.1.S1_at--569--4711Chr03:3481696..3481720 (25 bp)
GCTGGCAACTCGAAGGAGGCATTCC
LOC_Os03g06910
OsAffx.24999.1.S1_at--313--6211Chr03:3481681..3481705 (25 bp)
GAGGCATTCCAGCTTCATGATGAGA
LOC_Os03g06910
Target Sequence 
TATGCATTCTCGTGAAATCTTCCCCAATCATGTTACGTACAGTATCCTAATCGACAGTCACTGTGAGAAGGGACAAGTGG
AAGATGCATTTGGTTTTTTGGATGAAATGATAAATAAGGGCATTTTGCCAAACATCATGACATATAATTCCATCATTAAG
GGCTATTGCCGGTCTGGAAATGTTTCAAAGGGGCAGAAGTTCTTGCAAAAGATGATGGTCAACAAGGTGTCACCTGATTT
AATTACTTACAACACCCTAATCCATGGTTATATCAAAGAAGATAAGATGCACGATGCTTTTAAGTTGCTTAACATGATGG
AGAAGGAAAAGGTTCAACCAGATGTTGTCACATATAATATGCTCATAAATGGGTTTTCTGTACATGGTAATGTGCAAGAA
GCTGGTTGGATTTTTGAGAAAATGTGTGCTAAAGGAATTGAACCAGATAGATATACATACATGTCTATGATAAATGGTCA
TGTCACAGCTGGCAACTCGAAGGAGGCATTCCAGCTTCATGATGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis