Browse Element(s) Details


OsAffx.25011.1.S1_at

Description tigr:9631.m00701
TID=OsAffx.25011.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0766011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07600Os.52762.1.S1_at11/113+3846298..3850465Calcium-binding protein 39, putative, expressed
LOC_Os03g07610OsAffx.12767.1.S1_at11/113+3851280..3851687hypothetical protein
LOC_Os03g07620OsAffx.12768.1.S1_at11/113+3853264..3853659hypothetical protein
LOC_Os03g07630OsAffx.16205.1.S1_at2/113+3856238..3858562hypothetical protein
LOC_Os03g07640NANA3+3862120..3862749transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g07650Os.57326.1.S1_at11/113+3868676..3869418expressed protein
LOC_Os03g07660OsAffx.25011.1.S1_at11/113+3872158..3872520hypothetical protein
LOC_Os03g07670NANA3+3873943..3877272transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g07680Os.45976.1.S1_x_at3/113+3879573..3883226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g07690NANA3+3889584..3890018hypothetical protein
LOC_Os03g07700OsAffx.12769.1.S1_at11/113+3890769..3891122hypothetical protein
LOC_Os03g07710OsAffx.3167.1.S1_at11/113+3895162..3895670hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25011.1.S1_at--1122--891Chr03:3872417..3872441 (25 bp)
AGGCGACGTACAGGCCGATCGGCAA
LOC_Os03g07660
OsAffx.25011.1.S1_at--803--4011Chr03:3872411..3872435 (25 bp)
CGTACAGGCCGATCGGCAACACCAG
LOC_Os03g07660
OsAffx.25011.1.S1_at--64--7411Chr03:3872379..3872403 (25 bp)
GTGATCCTGCAGGTGGGCCGCTTCT
LOC_Os03g07660
OsAffx.25011.1.S1_at--508--1051Chr03:3872369..3872393 (25 bp)
AGGTGGGCCGCTTCTCGGTGCTCGT
LOC_Os03g07660
OsAffx.25011.1.S1_at--537--7151Chr03:3872346..3872370 (25 bp)
GTCTACGACCTGTCGCACCGCAAGA
LOC_Os03g07660
OsAffx.25011.1.S1_at--37--8711Chr03:3872336..3872360 (25 bp)
TGTCGCACCGCAAGAGCCTGGTGTT
LOC_Os03g07660
OsAffx.25011.1.S1_at--330--3351Chr03:3872331..3872355 (25 bp)
CACCGCAAGAGCCTGGTGTTCGTCT
LOC_Os03g07660
OsAffx.25011.1.S1_at--103--1711Chr03:3872265..3872289 (25 bp)
ACCAACTACCGCCTCGTGATCTTGG
LOC_Os03g07660
OsAffx.25011.1.S1_at--810--9931Chr03:3872259..3872283 (25 bp)
TACCGCCTCGTGATCTTGGCGGAGA
LOC_Os03g07660
OsAffx.25011.1.S1_at--617--2951Chr03:3872217..3872241 (25 bp)
AAGGCCAAGTTCCAGTGCGTCGTCT
LOC_Os03g07660
OsAffx.25011.1.S1_at--16--4391Chr03:3872214..3872238 (25 bp)
GCCAAGTTCCAGTGCGTCGTCTGGG
LOC_Os03g07660
Target Sequence 
AGGCGACGTACAGGCCGATCGGCAACACCAGCAACCTGGTGATCCTGCAGGTGGGCCGCTTCTCGGTGCTCGTCTACGAC
CTGTCGCACCGCAAGAGCCTGGTGTTCGTCTCCGTCGTCAGCGGCGAGACCGAGGCGGCGGTGGGCGGCGGCACCAACTA
CCGCCTCGTGATCTTGGCGGAGACGACGCCCGGCGGGAGCAAGGCCAAGTTCCAGTGCGTCGTCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis