Browse Element(s) Details


OsAffx.25046.1.S1_at

Description tigr:9631.m00997
TID=OsAffx.25046.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1083011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10800Os.5794.1.S1_a_at11/113+5509785..5513434transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g10810OsAffx.25045.1.S1_at11/113+5517813..5519436acetyltransferase, GNAT family protein, expressed
LOC_Os03g10820OsAffx.12813.1.S1_s_at11/113+5526246..5530487expressed protein
LOC_Os03g10830OsAffx.25046.1.S1_at11/113+5537093..5537856hypothetical protein
LOC_Os03g10840OsAffx.22433.5.S1_s_at11/113+5546863..5549667hypothetical protein
LOC_Os03g10840OsAffx.22433.5.S1_at5/113+5546863..5549667hypothetical protein
LOC_Os03g10850Os.14106.1.S1_at10/113+5552488..5555549expressed protein
LOC_Os03g10850OsAffx.12815.1.S1_at2/113+5552488..5555549expressed protein
LOC_Os03g10860Os.4660.1.S1_s_at11/113+5561171..5561827expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25046.1.S1_at--499--3431Chr03:5537801..5537825 (25 bp)
CAGATATAGCAAGCACCGATGGTGG
LOC_Os03g10830
OsAffx.25046.1.S1_at--795--1491Chr03:5537790..5537814 (25 bp)
AGCACCGATGGTGGCGGATACGACA
LOC_Os03g10830
OsAffx.25046.1.S1_at--751--4671Chr03:5537777..5537801 (25 bp)
GCGGATACGACAGAGAGTACGTACA
LOC_Os03g10830
OsAffx.25046.1.S1_at--931--2571Chr03:5537746..5537770 (25 bp)
AACGGCAAGGAAGCAGGCAATATCA
LOC_Os03g10830
OsAffx.25046.1.S1_at--1033--8211Chr03:5537731..5537755 (25 bp)
GGCAATATCATATCCGGTCAAGTGT
LOC_Os03g10830
OsAffx.25046.1.S1_at--576--3571Chr03:5537728..5537747 (20 bp)
CATATCCGGTCAAGTGTGAGCGAGA
LOC_Os03g10830
OsAffx.25046.1.S1_at--332--1071Chr03:5537157..5537181 (25 bp)
AGGGACCAGACCAGAGGGTGTACAA
LOC_Os03g10830
OsAffx.25046.1.S1_at--241--871Chr03:5537150..5537174 (25 bp)
AGACCAGAGGGTGTACAACTACTAC
LOC_Os03g10830
OsAffx.25046.1.S1_at--380--7031Chr03:5537138..5537162 (25 bp)
GTACAACTACTACAGCGTTCGCATC
LOC_Os03g10830
OsAffx.25046.1.S1_at--631--9891Chr03:5537131..5537155 (25 bp)
TACTACAGCGTTCGCATCAGCGGAT
LOC_Os03g10830
OsAffx.25046.1.S1_at--943--1631Chr03:5537125..5537149 (25 bp)
AGCGTTCGCATCAGCGGATCGCTGT
LOC_Os03g10830
Target Sequence 
CAGATATAGCAAGCACCGATGGTGGCGGATACGACAGAGAGTACGTACAGGAGAAAACGGCAAGGAAGCAGGCAATATCA
TATCCGGTCAAGTGTGAGCGAGAGACCGAGGCCGAGGGACCAGACCAGAGGGTGTACAACTACTACAGCGTTCGCATCAG
CGGATCGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis