Browse Element(s) Details


OsAffx.25065.1.S1_at

Description tigr:9631.m01126
TID=OsAffx.25065.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1206410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12030Os.9724.1.S1_at11/113+6281907..6283964very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os03g12040OsAffx.12832.1.S1_at11/113+6297809..6298413hypothetical protein
LOC_Os03g12050Os.24333.1.S1_x_at11/113+6301098..6302967expressed protein
LOC_Os03g12050Os.24333.2.S1_at11/113+6301098..6302967expressed protein
LOC_Os03g12064Os.14776.1.A1_at11/113+6306422..6313851expressed protein
LOC_Os03g12064Os.14776.2.A1_at11/113+6306422..6313851expressed protein
LOC_Os03g12064OsAffx.25065.1.S1_at10/113+6306422..6313851expressed protein
LOC_Os03g12064Os.14776.1.A2_at1/113+6306422..6313851expressed protein
LOC_Os03g12080NANA3+6318131..6319924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12090OsAffx.3204.1.S1_at10/113+6321465..6331026expressed protein
LOC_Os03g12100Os.54774.1.S1_x_at2/113+6331483..6332134retrotransposon, putative, centromere-specific, expressed
LOC_Os03g12100Os.54774.1.S1_at2/113+6331483..6332134retrotransposon, putative, centromere-specific, expressed
LOC_Os03g12110Os.37866.1.S1_at11/113+6333974..6336920Homocysteine S-methyltransferase 1, putative, expressed
LOC_Os03g12120Os.49206.1.S1_at11/113+6337210..6344710No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25065.1.S1_at--848--4251Chr03:6307182..6307206 (25 bp)
CCGGTGTACTGCATGCGCAGTCGTG
LOC_Os03g12064
OsAffx.25065.1.S1_at--827--591Chr03:6307194..6307218 (25 bp)
ATGCGCAGTCGTGTTCCCAATTTGC
LOC_Os03g12064
OsAffx.25065.1.S1_at--362--7411Chr03:6307204..6307228 (25 bp)
GTGTTCCCAATTTGCTCCACATGTG
LOC_Os03g12064
OsAffx.25065.1.S1_at--704--2111Chr03:6307222..6307246 (25 bp)
ACATGTGCCTTGCTGCCATTGATGA
LOC_Os03g12064
OsAffx.25065.1.S1_at--316--51Chr03:6307239..6307260 (22 bp)
ATTGATGACCTCGACCACCACTATT
LOC_Os03g12064
OsAffx.25065.1.S1_at--894--8631NONE
TGGGCAAGCAAGTTGCCGTTCCCAT
NONE
OsAffx.25065.1.S1_at--965--9431Chr03:6308281..6308361 (25 bp)
TCGGCCTAGGAAGGCTAGAACTCCC
LOC_Os03g12064
OsAffx.25065.1.S1_at--435--2891Chr03:6308347..6308370 (24 bp)
GAAGGCTAGAACTCCCAAACCCAAT
LOC_Os03g12064
OsAffx.25065.1.S1_at--300--3291Chr03:6308361..6308385 (25 bp)
CAAACCCAATGACGAACCTTGCCTG
LOC_Os03g12064
OsAffx.25065.1.S1_at--251--3831Chr03:6308383..6308407 (25 bp)
CTGCCTGCCCTTCAGAGGGAAGCAT
LOC_Os03g12064
OsAffx.25065.1.S1_at--254--9791Chr03:6308407..6308431 (25 bp)
TAAGTTCAGAAAATGCCACTCTCAA
LOC_Os03g12064
Target Sequence 
CCGGTGTACTGCATGCGCAGTCGTGTTCCCAATTTGCTCCACATGTGCCTTGCTGCCATTGATGACCTCGACCACCACTA
TTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACTAATTGGATCACTGAAGT
GCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGGCAAAAATTAAAAAAAGAATTCGTTCTCTCAATC
TCAGAAAGAGTCTTGGGCAAGCAAGTTGCCGTTCCCATGTTTGTTGAAGAAACTATCGGGACTATGTTTCGCCATACTCC
TATACACACGTTTTGCTGGATATATAAGAAAAGGGACATGTCAGTTATCACTTTGCAAAGGATTCAGATGGTCTTCGGCC
TAGGAAGGCTAGAACTCCCAAACCCAATGACGAACCTTGCCTGCCTGCCCTTCAGAGGGAAGCATAAGTTCAGAAAATGC
CACTCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis