Browse Element(s) Details


OsAffx.25067.1.S1_at

Description tigr:9631.m01149
TID=OsAffx.25067.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g100545/11NB-ARC domain containing protein, expressed
LOC_Os04g341601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10000Os.53295.1.A1_at11/119+5444591..5449231cation exchanger, putative, expressed
LOC_Os09g10000OsAffx.17627.1.S1_s_at11/119+5444591..5449231cation exchanger, putative, expressed
LOC_Os09g10000OsAffx.17627.1.S1_at7/119+5444591..5449231cation exchanger, putative, expressed
LOC_Os09g10010NANA9+5453170..5453706expressed protein
LOC_Os09g10020Os.17937.3.S1_at1/119+5455318..5460131transposon protein, putative, unclassified
LOC_Os09g10030Os.46012.3.S1_x_at7/119+5462372..5468063retrotransposon protein, putative, unclassified
LOC_Os09g10030Os.46012.2.S1_x_at6/119+5462372..5468063retrotransposon protein, putative, unclassified
LOC_Os09g10030Os.27088.1.A1_x_at5/119+5462372..5468063retrotransposon protein, putative, unclassified
LOC_Os09g10030Os.54691.1.S1_x_at1/119+5462372..5468063retrotransposon protein, putative, unclassified
LOC_Os09g10054Os.27702.2.A1_at11/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10054OsAffx.29785.1.S1_s_at11/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10054Os.27702.1.S1_x_at10/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10054OsAffx.25067.1.S1_at5/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10054Os.52634.2.S1_x_at1/119+5470800..5490310NB-ARC domain containing protein, expressed
LOC_Os09g10080NANA9+5491541..5494479retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10090Os.38764.1.S1_x_at8/119+5497077..5498041retrotransposon protein, putative, unclassified
LOC_Os09g10090Os.10731.1.A1_a_at3/119+5497077..5498041retrotransposon protein, putative, unclassified
LOC_Os09g10100Os.46012.2.S1_x_at6/119+5502778..5504667retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g10100Os.46012.3.S1_x_at5/119+5502778..5504667retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g10100Os.27088.1.A1_x_at5/119+5502778..5504667retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g10100Os.46012.3.S1_at2/119+5502778..5504667retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g10100Os.54691.1.S1_x_at1/119+5502778..5504667retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g10109NANA9+5506267..5507347retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10120NANA9+5507543..5510745Zinc knuckle family protein
LOC_Os09g10130NANA9+5513058..5514138retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10140NANA9+5514334..5517536Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25067.1.S1_at--763--4291Chr03:6436201..6436225 (25 bp)
CCTCTACGCGCAATGGTAGCCTTGG
NONE
OsAffx.25067.1.S1_at--176--8632Chr03:6436223..6436247 (25 bp)
TGGTGGACTCCTGCAATGTCCCCAA
NONE
OsAffx.25067.1.S1_at--695--9011Chr03:6436234..6436258 (25 bp)
TGCAATGTCCCCAAAGCTCTTCAGG
NONE
OsAffx.25067.1.S1_at--750--2354Chr03:6436246..6436270 (25 bp)
AAAGCTCTTCAGGTCTAGGGTGTTT
NONE
OsAffx.25067.1.S1_at--59--100910Chr11:10537285..10537439 (25 bp)
TAGGGTGTTTGACGAGGCCTCACTT
NONE
OsAffx.25067.1.S1_at--180--6835Chr11:6972945..6973017 (24 bp)
GTTTGACGAGGCCTCACTTCCTTGG
NONE
OsAffx.25067.1.S1_at--924--2054Chr03:6436282..6436306 (25 bp)
ACTTCCTTGGCTTCGTTCCTTGCTA
NONE
OsAffx.25067.1.S1_at--324--4031Chr03:6436295..6436319 (25 bp)
CGTTCCTTGCTACAACGGGTGTTCA
NONE
OsAffx.25067.1.S1_at--1142--2574Chr04:20515729..20515750 (22 bp)
AACGGGTGTTCATCACTCTTATCTG
LOC_Os04g34160
OsAffx.25067.1.S1_at--216--394Chr03:6436319..6436343 (25 bp)
ATCACTCTTATCTGGTTACTGTGGG
NONE
OsAffx.25067.1.S1_at--599--8231Chr03:6436382..6436406 (25 bp)
GGCAACAATGACACACTGCAATTTC
NONE
Target Sequence 
CCTCTACGCGCAATGGTAGCCTTGGTGGACTCCTGCAATGTCCCCAAAGCTCTTCAGGTCTAGGGTGTTTGACGAGGCCT
CACTTCCTTGGCTTCGTTCCTTGCTACAACGGGTGTTCATCACTCTTATCTGGTTACTGTGGGGTAGAGTCGGAACTGCT
TTGCTGGGGGCGACGAAGCTTGGCAACAATGACACACTGCAATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis