Browse Element(s) Details


OsAffx.25069.1.S1_at

Description tigr:9631.m01179
TID=OsAffx.25069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1254011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12510Os.12163.1.S1_at11/113+6604090..6605196Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g12510Os.12191.1.S1_s_at11/113+6604090..6605196Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g12520Os.43916.1.S1_at11/113+6606076..6609359Protein kinase domain containing protein, expressed
LOC_Os03g12530Os.34767.1.S1_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12530Os.34767.2.S1_s_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12530Os.15382.1.A1_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12540OsAffx.25069.1.S1_at11/113+6620531..6621229hypothetical protein
LOC_Os03g12550Os.17828.1.S1_s_at11/113+6626405..6632923expressed protein
LOC_Os03g12560Os.9413.1.S1_at11/113+6633739..6635783expressed protein
LOC_Os03g12570Os.12659.1.S1_at11/113+6637038..6647835C-5 cytosine-specific DNA methylase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25069.1.S1_at--388--4211Chr03:6620916..6620940 (25 bp)
CCCCTTCACTTAAACATGTCATCTT
LOC_Os03g12540
OsAffx.25069.1.S1_at--892--5231Chr03:6620862..6620886 (25 bp)
GAATCGGGCCGAATTCTCCGAAACT
LOC_Os03g12540
OsAffx.25069.1.S1_at--723--7551Chr03:6620857..6620881 (25 bp)
GGGCCGAATTCTCCGAAACTTTCAT
LOC_Os03g12540
OsAffx.25069.1.S1_at--986--5531Chr03:6620843..6620867 (25 bp)
GAAACTTTCATACATGTCCGGAACT
LOC_Os03g12540
OsAffx.25069.1.S1_at--808--751Chr03:6620830..6620854 (25 bp)
ATGTCCGGAACTTCAATCCATGGTA
LOC_Os03g12540
OsAffx.25069.1.S1_at--357--3491Chr03:6620805..6620829 (25 bp)
CATGGAGTATATCAGAGGGTGTCAA
LOC_Os03g12540
OsAffx.25069.1.S1_at--12--3431Chr03:6620793..6620817 (25 bp)
CAGAGGGTGTCAACGTCTTCACGGG
LOC_Os03g12540
OsAffx.25069.1.S1_at--481--7631Chr03:6620599..6620620 (22 bp)
GGGAGACAGTCCCACGGCCGTACTA
LOC_Os03g12540
OsAffx.25069.1.S1_at--466--8411Chr03:6620584..6620608 (25 bp)
GGCCGTACTACGGACTGCAATGGTA
LOC_Os03g12540
OsAffx.25069.1.S1_at--408--9931Chr03:6620576..6620600 (25 bp)
TACGGACTGCAATGGTACAACCACT
LOC_Os03g12540
OsAffx.25069.1.S1_at--880--7811Chr03:6620563..6620587 (25 bp)
GGTACAACCACTAGTGACAAAGGGT
LOC_Os03g12540
Target Sequence 
CCCCTTCACTTAAACATGTCATCTTTCATGTAATTATTAATGGTGAAGTTGAGGGAATCGGGCCGAATTCTCCGAAACTT
TCATACATGTCCGGAACTTCAATCCATGGTACATGGAGTATATCAGAGGGTGTCAACGTCTTCACGGGGAGACAGTCCCA
CGGCCGTACTACGGACTGCAATGGTACAACCACTAGTGACAAAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis