Browse Element(s) Details


OsAffx.25074.1.S1_at

Description tigr:9631.m01201
TID=OsAffx.25074.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g127509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12730Os.18287.1.S1_at11/113+6783729..6787461Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g12739Os.57571.1.S1_at3/113+6793945..6794535NA
LOC_Os03g12750OsAffx.25074.1.S1_at9/113+6795264..6798259hypothetical protein
LOC_Os03g12750Os.57571.1.S2_at4/113+6795264..6798259hypothetical protein
LOC_Os03g12760OsAffx.24595.3.S1_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.2.S1_x_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.2.S1_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.1.S1_s_at7/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25074.1.S1_at--910--3251Chr03:6796531..6796550 (20 bp)
CAAAAAGCTCAAGTACTGGAAGTTT
LOC_Os03g12750
OsAffx.25074.1.S1_at--651--6811Chr03:6796547..6796568 (22 bp)
GTTTAGAAATTCACCAGTCGATATC
LOC_Os03g12750
OsAffx.25074.1.S1_at--912--5591NONE
GAAATTCACCAGTCGATATCAGATG
NONE
OsAffx.25074.1.S1_at--769--7211NONE
GTCGATATCAGATGGCTCAAAGAGC
NONE
OsAffx.25074.1.S1_at--628--2431Chr03:6798019..6798043 (25 bp)
AAAAGTTTCCCATTGTTTGAGTGCT
LOC_Os03g12750
OsAffx.25074.1.S1_at--949--6851Chr03:6798033..6798057 (25 bp)
GTTTGAGTGCTTGGATCAATTGTAT
LOC_Os03g12750
OsAffx.25074.1.S1_at--888--351Chr03:6798047..6798171 (25 bp)
ATCAATTGTATGAAGGCTTTACCTC
LOC_Os03g12750
OsAffx.25074.1.S1_at--26--2931Chr03:6798160..6798183 (24 bp)
AAGGCTTTACCTCTAGTACATCCAA
LOC_Os03g12750
OsAffx.25074.1.S1_at--25--10351Chr03:6798164..6798188 (25 bp)
TTTACCTCTAGTACATCCAACCATG
LOC_Os03g12750
OsAffx.25074.1.S1_at--99--7031Chr03:6798174..6798198 (25 bp)
GTACATCCAACCATGTCAACCTCAA
LOC_Os03g12750
OsAffx.25074.1.S1_at--723--2631Chr03:6798191..6798215 (25 bp)
AACCTCAAGGGCAAAGACATGGCAA
LOC_Os03g12750
Target Sequence 
CAAAAAGCTCAAGTACTGGAAGTTTAGAAATTCACCAGTCGATATCAGATGGCTCAAAGAGCAAGGAAGATCAGAAGTTG
AAGAGGCATGAGAACAAAAGTTTCCCATTGTTTGAGTGCTTGGATCAATTGTATGAAGGCTTTACCTCTAGTACATCCAA
CCATGTCAACCTCAAGGGCAAAGACATGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis