Browse Element(s) Details


OsAffx.25076.1.S1_at

Description tigr:9631.m01205
TID=OsAffx.25076.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MATE efflux family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1279011/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12760OsAffx.24595.3.S1_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.2.S1_x_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.2.S1_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.1.S1_s_at7/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12780OsAffx.12835.1.S1_at11/113+6823743..6824357hypothetical protein
LOC_Os03g12790OsAffx.25076.1.S1_at11/113+6833233..6835499MATE efflux family protein, expressed
LOC_Os03g12800NANA3+6836992..6837476hypothetical protein
LOC_Os03g12810Os.11971.1.S1_at11/113+6850918..6854501Maf family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25076.1.S1_at--822--8451Chr03:6833714..6833738 (25 bp)
TGGCCGCCACCGACTGGGACGTCGA
LOC_Os03g12790
OsAffx.25076.1.S1_at--255--8471Chr03:6833687..6833711 (25 bp)
TGGCGCGTGCCAAGGAGCTGACCAA
LOC_Os03g12790
OsAffx.25076.1.S1_at--377--2911Chr03:6833676..6833700 (25 bp)
AAGGAGCTGACCAAGGCGTCCACTA
LOC_Os03g12790
OsAffx.25076.1.S1_at--1045--8911Chr03:6833669..6833693 (25 bp)
TGACCAAGGCGTCCACTACAGGCAG
LOC_Os03g12790
OsAffx.25076.1.S1_at--689--4351Chr03:6833632..6833656 (25 bp)
CCAGCACGAGTGCAACAACAGCAAC
LOC_Os03g12790
OsAffx.25076.1.S1_at--961--8291Chr03:6833587..6833611 (25 bp)
GGCTAACACCAAAACGACAACGTCT
LOC_Os03g12790
OsAffx.25076.1.S1_at--949--4511Chr03:6833559..6833583 (25 bp)
GCCGCCAATAACATCAATGCCGGTG
LOC_Os03g12790
OsAffx.25076.1.S1_at--854--5051Chr03:6833528..6833552 (25 bp)
GCAGCAGCGACAACCGCGGTTACGT
LOC_Os03g12790
OsAffx.25076.1.S1_at--232--6771Chr03:6833510..6833534 (25 bp)
GTTACGTGCCCATCAGCGAGAGCGG
LOC_Os03g12790
OsAffx.25076.1.S1_at--577--1831Chr03:6833402..6833426 (25 bp)
ACGCGTTAGGCGTCGACACGAAGGC
LOC_Os03g12790
OsAffx.25076.1.S1_at--541--6011Chr03:6833295..6833319 (25 bp)
GAGAGGGCCCCGCTGATCAGTGTGG
LOC_Os03g12790
Target Sequence 
TGGCCGCCACCGACTGGGACGTCGAGGTGGCGCGTGCCAAGGAGCTGACCAAGGCGTCCACTACAGGCAGCGGCACCAAC
CACCAGCACGAGTGCAACAACAGCAACACCAACACCGCCAACGCAAAGGCTAACACCAAAACGACAACGTCTCCCGCCGC
CAATAACATCAATGCCGGTGGCGGCGGCAGCAGCGACAACCGCGGTTACGTGCCCATCAGCGAGAGCGGCCACAACGACG
GCAGCGACGACCTGGAGAAGCTGGAGGAAGGGCTCATGGTGGCCACGAGTGGCGGCTGCTGCGGCTGCGGCGACGCGTTA
GGCGTCGACACGAAGGCTGGGGACAAGCAGCAGTGCAGCAACGGTGGTGCCGGTACGGCGGAGGGAAATGCGGGGCAGAG
GAGGGGCTCGGCGTCGTCGGAGAGGGCCCCGCTGATCAGTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis