Browse Element(s) Details


OsAffx.25139.1.S1_at

Description tigr:9631.m01886
TID=OsAffx.25139.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1910411/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19060NANA3+10652230..10655534hypothetical protein
LOC_Os03g19070Os.10091.1.S1_at11/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.1.S1_s_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.2.S1_x_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.1.S1_x_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19080Os.8876.1.S1_at11/113+10663346..10667807expressed protein
LOC_Os03g19090Os.6269.1.S1_at11/113+10671364..10672937expressed protein
LOC_Os03g19104OsAffx.25139.1.S1_at11/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.46012.2.S1_x_at7/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.46012.3.S1_x_at4/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.27088.1.A1_x_at4/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.10263.1.S1_at2/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.45902.1.A1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104OsAffx.10222.1.S1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.54691.1.S1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104OsAffx.22442.1.S1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19120OsAffx.12932.1.S1_at11/113+10686231..10692046P protein C-terminus containing protein
LOC_Os03g19120Os.57514.1.S1_x_at1/113+10686231..10692046P protein C-terminus containing protein
LOC_Os03g19129NANA3+10694603..10694737NA
LOC_Os03g19140NANA3+10703073..10703738retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25139.1.S1_at--988--5991Chr03:10676883..10676907 (25 bp)
GAGAGGAACGACTCATTAATGCCCC
LOC_Os03g19104
OsAffx.25139.1.S1_at--452--6191Chr03:10676911..10676935 (25 bp)
GAGGAAGAACAACGCCCGAAGCACC
LOC_Os03g19104
OsAffx.25139.1.S1_at--393--5391Chr03:10676928..10676952 (25 bp)
GAAGCACCATTGTTTCTCCTATCGA
LOC_Os03g19104
OsAffx.25139.1.S1_at--23--6851Chr03:10676939..10676963 (25 bp)
GTTTCTCCTATCGATCTGAAGCTAT
LOC_Os03g19104
OsAffx.25139.1.S1_at--661--6411Chr03:10676951..10676975 (25 bp)
GATCTGAAGCTATCGCTCCATTTCT
LOC_Os03g19104
OsAffx.25139.1.S1_at--1135--1771Chr03:10676981..10677005 (25 bp)
ACCGGTCATTCTCTGTCAGTGTATG
LOC_Os03g19104
OsAffx.25139.1.S1_at--911--3451Chr03:10676997..10677021 (25 bp)
CAGTGTATGGACATCGTCGTGCCAA
LOC_Os03g19104
OsAffx.25139.1.S1_at--438--2371Chr03:10677036..10677060 (25 bp)
AAACCTCTACATGCCTTTGTGGAAT
LOC_Os03g19104
OsAffx.25139.1.S1_at--407--3691Chr03:10677050..10677074 (25 bp)
CTTTGTGGAATACCCGCTGTCATCA
LOC_Os03g19104
OsAffx.25139.1.S1_at--242--1971Chr03:10677194..10677218 (25 bp)
ACTGTCTATGTACCGTGCCGCTCGA
LOC_Os03g19104
OsAffx.25139.1.S1_at--384--3891Chr03:10677336..10677360 (25 bp)
CTGTCGCTGAGGTTCGCCACATGGG
LOC_Os03g19104
Target Sequence 
GAGAGGAACGACTCATTAATGCCCCCAAGAGGAAGAACAACGCCCGAAGCACCATTGTTTCTCCTATCGATCTGAAGCTA
TCGCTCCATTTCTCCACCACCGGTCATTCTCTGTCAGTGTATGGACATCGTCGTGCCAACGCCTCCTGCCGGCAAACCTC
TACATGCCTTTGTGGAATACCCGCTGTCATCAGCCTCCCTATCGTCGCCACACCGGCCGTCTTACCATCGCCGTCGCCCA
CACTGACCTCCCGACGCCACCCACGCCGGTCTTCCACAACCATCATCGTCTCTGACAAGCCCCCTGCCACCACTGTCTAT
GTACCGTGCCGCTCGACCAGATCCGTCGTAGGGGCTCCCGTGGGCTCCACCATCGTCATCGTCCATGCACAAATGTGCCC
GTCAGCACCATCGCCGTCTTCTCCAATGCCGATGCTCCCTGTCGTCACTGTCGCTGTCGCTGAGGTTCGCCACATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis