Browse Element(s) Details


Os.10091.1.S1_at

Description gb:AK061293.1
DB_XREF= gi:32971311
TID=Os.10091.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10091 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-301-B04, full insert sequence.
FL= gb:AK061293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1907011/11long cell-linked locus protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19020Os.8914.1.S1_at11/113+10630243..10634687PHD-finger family protein, expressed
LOC_Os03g19030OsAffx.15200.2.S1_x_at5/113+10640221..10640985hypothetical protein
LOC_Os03g19030OsAffx.15200.2.S1_at3/113+10640221..10640985hypothetical protein
LOC_Os03g19030OsAffx.15200.3.S1_s_at1/113+10640221..10640985hypothetical protein
LOC_Os03g19040Os.54627.1.S1_at11/113+10641421..10642485expressed protein
LOC_Os03g19050Os.35344.18.S1_x_at10/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050Os.35344.3.S1_x_at9/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050OsAffx.22940.5.S1_at5/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050OsAffx.22940.5.S1_x_at4/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19060NANA3+10652230..10655534hypothetical protein
LOC_Os03g19070Os.10091.1.S1_at11/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.1.S1_s_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.2.S1_x_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.1.S1_x_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19080Os.8876.1.S1_at11/113+10663346..10667807expressed protein
LOC_Os03g19090Os.6269.1.S1_at11/113+10671364..10672937expressed protein
LOC_Os03g19104OsAffx.25139.1.S1_at11/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.46012.2.S1_x_at7/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.46012.3.S1_x_at4/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.27088.1.A1_x_at4/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.10263.1.S1_at2/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.45902.1.A1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104OsAffx.10222.1.S1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.54691.1.S1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104OsAffx.22442.1.S1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10091.1.S1_at--80--3171Chr03:10657535..10657559 (25 bp)
AATTCCACGCGCAGATGAAGCTACA
LOC_Os03g19070
Os.10091.1.S1_at--1154--6191Chr03:10657560..10657584 (25 bp)
GAGGCAAATCTCATGGCTGCAGTAC
LOC_Os03g19070
Os.10091.1.S1_at--472--5872Chr05:791621..791644 (24 bp)
GAGCCTCCGCTAGATGATTATTCCT
NONE
Os.10091.1.S1_at--430--71Chr03:10657621..10657645 (25 bp)
ATTCCTACCCAATAAGATCCATTTT
LOC_Os03g19070
Os.10091.1.S1_at--562--10391Chr03:10657644..10657668 (25 bp)
TTTTGCGTTTTGTTTCACCGATTCA
LOC_Os03g19070
Os.10091.1.S1_at--735--6551Chr03:10657663..10657687 (25 bp)
GATTCAAATTCATACACCAGCTAAA
LOC_Os03g19070
Os.10091.1.S1_at--1005--8871Chr03:10657701..10657725 (25 bp)
TGAGGAGTAGCTTCGTATACGTACA
LOC_Os03g19070
Os.10091.1.S1_at--633--5491Chr03:10657889..10657913 (25 bp)
GAACATGCAGTTGCTTTGGCTCAAT
LOC_Os03g19070
Os.10091.1.S1_at--813--8311Chr03:10657906..10657930 (25 bp)
GGCTCAATGTAAGCTGTACTGCTGT
LOC_Os03g19070
Os.10091.1.S1_at--547--9911Chr03:10657922..10657946 (25 bp)
TACTGCTGTGTATCCGCATGGTACA
LOC_Os03g19070
Os.10091.1.S1_at--10--3511Chr03:10657938..10657962 (25 bp)
CATGGTACACTTGCTTGATTCAATT
LOC_Os03g19070
Target Sequence 
AATTCCACGCGCAGATGAAGCTACAGAGGCAAATCTCATGGCTGCAGTACAACGAGATGATGGAGAGGAGCCTCCGCTAG
ATGATTATTCCTACCCAATAAGATCCATTTTTTGCGTTTTGTTTCACCGATTCAAATTCATACACCAGCTAAAAATACAG
AGATATTGAGGAGTAGCTTCGTATACGTACAGTACAGATCAATACATTTTTAAATTTATTTTTCTTCCNTTGAGCNTTGA
TATTGGTTTGGTTCATTGGNTGCGAATTGATATCTGTACATTTTGTGCATTGAGAATAAACGAGCAGAGCAGAAATTTCA
GATTCAGGAGGAGGCTTCTTCTTGGACGCGCAGAAGAACATGCAGTTGCTTTGGCTCAATGTAAGCTGTACTGCTGTGTA
TCCGCATGGTACACTTGCTTGATTCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis