Browse Element(s) Details


OsAffx.25172.1.S1_at

Description tigr:9631.m02073
TID=OsAffx.25172.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2084011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20780Os.12691.1.A1_a_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20780Os.12691.3.S1_x_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20780Os.12691.1.A1_x_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.1.A1_a_at11/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.2.S1_a_at11/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.3.S1_x_at11/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.1.A1_x_at5/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.4.S1_at1/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20800OsAffx.25171.1.S1_at11/113+11761478..11762354hypothetical protein
LOC_Os03g20810NANA3+11764459..11767748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g20820Os.47463.1.S1_x_at6/113+11769165..11773944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g20820Os.14491.2.S1_x_at5/113+11769165..11773944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g20830OsAffx.12957.1.S1_at11/113+11774552..11775088hypothetical protein
LOC_Os03g20840OsAffx.25172.1.S1_at11/113+11777136..11780357NB-ARC domain containing protein, expressed
LOC_Os03g20850OsAffx.26595.1.S1_s_at11/113+11784022..11786638secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os03g20850Os.15776.1.S1_at11/113+11784022..11786638secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os03g20860OsAffx.23885.1.S1_s_at11/113+11787185..11792036expressed protein
LOC_Os03g20860Os.8860.1.S1_at11/113+11787185..11792036expressed protein
LOC_Os03g20860OsAffx.12958.1.S1_at6/113+11787185..11792036expressed protein
LOC_Os03g20870Os.19480.1.S1_at11/113+11795300..11797085Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g20880OsAffx.12959.1.S1_at11/113+11798795..11802273Pyruvate kinase, cytosolic isozyme, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25172.1.S1_at--429--2571Chr03:11777678..11777702 (25 bp)
AACTGTGGCATGTTGTGTTCTCTTC
LOC_Os03g20840
OsAffx.25172.1.S1_at--848--2151Chr03:11777643..11777667 (25 bp)
ACACCTTCATGATCTAGTCGTTCGT
LOC_Os03g20840
OsAffx.25172.1.S1_at--1024--1631Chr03:11777588..11777612 (25 bp)
AGCGAGCTGATGTCTCTGACTTCAC
LOC_Os03g20840
OsAffx.25172.1.S1_at--966--3851Chr03:11777573..11777597 (25 bp)
CTGACTTCACTAACGCTGATGCATT
LOC_Os03g20840
OsAffx.25172.1.S1_at--151--2491Chr03:11777476..11777500 (25 bp)
AACAGCTTTCCTCAGTGTCTGATAA
LOC_Os03g20840
OsAffx.25172.1.S1_at--1074--3091Chr03:11777453..11777477 (25 bp)
AATAGCGGCATGGAGGCACTCTCTT
LOC_Os03g20840
OsAffx.25172.1.S1_at--36--6071Chr03:11777423..11777447 (25 bp)
GAGTTCCTTGAGATATCATCCTGCA
LOC_Os03g20840
OsAffx.25172.1.S1_at--563--5471Chr03:11777396..11777420 (25 bp)
GAACTCCAGCGATTTTCTGTTGTGG
LOC_Os03g20840
OsAffx.25172.1.S1_at--189--1631Chr03:11777329..11777353 (25 bp)
AGCTGGAAGCTCTGCCAACAGGTTT
LOC_Os03g20840
OsAffx.25172.1.S1_at--212--7871Chr03:11777309..11777333 (25 bp)
GGTTTGGGCAACTTGGGATCTCTTA
LOC_Os03g20840
OsAffx.25172.1.S1_at--422--3971Chr03:11777233..11777257 (25 bp)
CGGTATTGCCTGATAGTGTCTCCTA
LOC_Os03g20840
Target Sequence 
AACTGTGGCATGTTGTGTTCTCTTCCTGGGCTTCAACACCTTCATGATCTAGTCGTTCGTAGAGGCAATGATCAACTAAT
CGGATGGATCAGCGAGCTGATGTCTCTGACTTCACTAACGCTGATGCATTCTACAGAAACGATGGATATACAGCAGTTAC
AACAGTTGAGTGCGTTGAAGAGATTAAAGATTGGAGGATTTAAACAGCTTTCCTCAGTGTCTGATAATAGCGGCATGGAG
GCACTCTCTTCCCTTGAGTTCCTTGAGATATCATCCTGCACAGAACTCCAGCGATTTTCTGTTGTGGGATTGCAATCACT
GAAGGATTTCAAGCTTCGCCATTGCACCAAGCTGGAAGCTCTGCCAACAGGTTTGGGCAACTTGGGATCTCTTAGATGTG
TTGAAATTCACGACATTCCTAACTTGAGAATAGACAATACTGGCACGGTATTGCCTGATAGTGTCTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis