Browse Element(s) Details


OsAffx.2519.1.S1_at

Description tigr:9630.m00551
TID=OsAffx.2519.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to disease resistance proteins
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0622011/11Conotoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06190Os.50946.1.S1_at11/112+3092568..3095101Leucine Rich Repeat family protein, expressed
LOC_Os02g06200OsAffx.11911.1.S1_at11/112+3097245..3099377Leucine Rich Repeat family protein, expressed
LOC_Os02g06210Os.24551.4.S1_at11/112+3106308..3108577Leucine Rich Repeat family protein, expressed
LOC_Os02g06220OsAffx.2519.1.S1_at11/112+3113443..3114237Conotoxin family protein, expressed
LOC_Os02g06230Os.51693.1.S1_at7/112+3114376..3118797retrotransposon protein, putative, unclassified
LOC_Os02g06230Os.53737.1.S1_at4/112+3114376..3118797retrotransposon protein, putative, unclassified
LOC_Os02g06240OsAffx.11913.1.S1_at11/112+3119601..3120817Leucine Rich Repeat family protein
LOC_Os02g06250OsAffx.11914.1.S1_at11/112+3124209..3126567Leucine Rich Repeat family protein
LOC_Os02g06260OsAffx.11915.2.S1_at11/112+3126964..3129254Leucine Rich Repeat family protein, expressed
LOC_Os02g06270Os.24551.4.S1_at9/112+3132848..3135043Leucine Rich Repeat family protein
LOC_Os02g06280OsAffx.24124.1.S1_at11/112+3136181..3137963Leucine Rich Repeat family protein
LOC_Os02g06280Os.46824.2.S1_at1/112+3136181..3137963Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2519.1.S1_at--1088--451Chr02:3113698..3113722 (25 bp)
ATCTCTGTATCAATTGCCAACCTCA
LOC_Os02g06220
OsAffx.2519.1.S1_at--469--2571Chr02:3113833..3113857 (25 bp)
AACGGCGAGCTGCAGGAATCTTCAC
LOC_Os02g06220
OsAffx.2519.1.S1_at--350--1011Chr02:3113882..3113906 (25 bp)
AGGTTCTGAACATCTCCCACAATTT
LOC_Os02g06220
OsAffx.2519.1.S1_at--402--1191Chr02:3113917..3113941 (25 bp)
GAGTTTCCGTCCACGATATGGGAGA
LOC_Os02g06220
OsAffx.2519.1.S1_at--534--6111Chr02:3113946..3113970 (25 bp)
GAGTGATCTTGTCGCGATCAACGCG
LOC_Os02g06220
OsAffx.2519.1.S1_at--633--9711Chr02:3113963..3113987 (25 bp)
TCAACGCGAGCCACAACACTTTCAG
LOC_Os02g06220
OsAffx.2519.1.S1_at--68--3651Chr02:3114027..3114051 (25 bp)
CTTCGCTGTTCTTGATCTCTCATAC
LOC_Os02g06220
OsAffx.2519.1.S1_at--1095--331Chr02:3114048..3114072 (25 bp)
ATACAACCTCTTCAGTGGCAGCATT
LOC_Os02g06220
OsAffx.2519.1.S1_at--163--7071Chr02:3114086..3114110 (25 bp)
GTAAGTGCTCTTCACTCAGAGTGCT
LOC_Os02g06220
OsAffx.2519.1.S1_at--1087--8491Chr02:3114135..3114159 (25 bp)
TGGCAGCTTGTCAGATGAGCTCTTT
LOC_Os02g06220
OsAffx.2519.1.S1_at--981--8851Chr02:3114159..3114183 (25 bp)
TGATGCTTCCATGTTGGAGCACCTC
LOC_Os02g06220
Target Sequence 
ATCTCTGTATCAATTGCCAACCTCACCGGCTTGCGCCGCCTCGACCTGTCGTACAATTCTCTCTCCGGCGAGCTCCCACC
GGAGTTGATCTCCTCCGCCAGCGTCGCCTTCCTCGACGTCAGCTTCAACCGCCTCAACGGCGAGCTGCAGGAATCTTCAC
CATCACTGCCTCACCATCCTCTTCAGGTTCTGAACATCTCCCACAATTTCTTCGCCGGGGAGTTTCCGTCCACGATATGG
GAGAAGAAGAGTGATCTTGTCGCGATCAACGCGAGCCACAACACTTTCAGTGGCGCGCTGCCGTCTTCTTTCTGCATCAG
CTCGCCATCCTTCGCTGTTCTTGATCTCTCATACAACCTCTTCAGTGGCAGCATTCCAGCTGAGATAGGTAAGTGCTCTT
CACTCAGAGTGCTCAAGGCTAGCAACAACGAGATCAATGGCAGCTTGTCAGATGAGCTCTTTGATGCTTCCATGTTGGAG
CACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis