Browse Element(s) Details


OsAffx.25190.1.S1_x_at

Description tigr:9631.m02244
TID=OsAffx.25190.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Heavy-metal-associated domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2249011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22480Os.56216.1.S1_at2/113+12864929..12870668transposon protein, putative, Mutator sub-class
LOC_Os03g22480Os.14919.1.S1_at2/113+12864929..12870668transposon protein, putative, Mutator sub-class
LOC_Os03g22480OsAffx.29313.1.S1_at1/113+12864929..12870668transposon protein, putative, Mutator sub-class
LOC_Os03g22490OsAffx.25190.1.S1_x_at11/113+12884726..12886584heavy metal-associated domain containing protein, expressed
LOC_Os03g22500OsAffx.25191.1.S1_at11/113+12905217..12906646hypothetical protein
LOC_Os03g22500Os.32925.1.S1_at1/113+12905217..12906646hypothetical protein
LOC_Os03g22510NANA3+12909096..12909630flowering promoting factor-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25190.1.S1_x_at--241--1091Chr03:12885299..12885323 (25 bp)
AGTGGTCGCCGTCGTACCTGTACAT
LOC_Os03g22490
OsAffx.25190.1.S1_x_at--672--4131Chr03:12885200..12885224 (25 bp)
CGCTGCAGGACGAGTACCGCATGTT
LOC_Os03g22490
OsAffx.25190.1.S1_x_at--448--6091Chr03:12885189..12885213 (25 bp)
GAGTACCGCATGTTCGACGACGAGA
LOC_Os03g22490
OsAffx.25190.1.S1_x_at--140--2611Chr03:12885159..12885183 (25 bp)
AACGCCTGCAGCGTCATGTGAACGC
LOC_Os03g22490
OsAffx.25190.1.S1_x_at--168--6091Chr03:12885063..12885087 (25 bp)
GAGTAGCTTGTTTACACTCTCCTCC
LOC_Os03g22490
OsAffx.25190.1.S1_x_at--480--6011Chr03:12885034..12885058 (25 bp)
GAGAGGTCAAAGCTCTCCTTCACCG
LOC_Os03g22490
OsAffx.25190.1.S1_x_at--468--9231Chr03:12885019..12885043 (25 bp)
TCCTTCACCGAGCATTTTCTTTTTT
LOC_Os03g22490
OsAffx.25190.1.S1_x_at--1138--2051Chr03:12884968..12884992 (25 bp)
ACTTCCTCTCTTACTGTTCTAATTA
LOC_Os03g22490
OsAffx.25190.1.S1_x_at--944--7071Chr03:12884933..12884957 (25 bp)
GTAATTGTAATGAGACACGCCAAAT
LOC_Os03g22490
OsAffx.25190.1.S1_x_at--408--5231Chr03:12884783..12884807 (25 bp)
GAATATTCTTGCTACATCTCTTCGT
LOC_Os03g22490
OsAffx.25190.1.S1_x_at--436--4851Chr03:12884773..12884797 (25 bp)
GCTACATCTCTTCGTTTTGTGAGAA
LOC_Os03g22490
Target Sequence 
AGTGGTCGCCGTCGTACCTGTACATGCCGTACCCGCACTCGTCGCCGGACACCTACTACCGCGACTACTACAGCCCGCCG
GGGACGGCGCACGCGCCGCCGCTGCAGGACGAGTACCGCATGTTCGACGACGAGAACCCCAACGCCTGCAGCGTCATGTG
AACGCCACGCGCCGCCGCCGCCGCCGCCGGCTAGCAGGCCAGGCCGGCCGGGAGAAGTAGTAGTTGAGGAGAGGTAGAGT
AGCTTGTTTACACTCTCCTCCATTGGAGAGGTCAAAGCTCTCCTTCACCGAGCATTTTCTTTTTTTTTTCTTTTTCCTTT
TTTTTTTCTTCACTTCCTCTCTTACTGTTCTAATTAACTAGAGCATGTAATTGTAATGAGACACGCCAAATTATATATGT
TTTTCTCTTATCATTTTGTATAAGGCAAAGACATATACATATATATAACAGATTACATAACTACTATAAGTACTAATTAT
TTTTCTATGGATAGAGAAGGTTCTATCTTTTGTAGAGAATATTCTTGCTACATCTCTTCGTTTTGTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25190.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis