Browse Element(s) Details


OsAffx.25204.1.S1_at

Description tigr:9631.m02379
TID=OsAffx.25204.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2441011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24380Os.8539.1.S1_at11/113+13857887..13861346glutathione peroxidase, putative, expressed
LOC_Os03g24390OsAffx.3305.1.S1_at11/113+13862507..13866586rhomboid protein, putative, expressed
LOC_Os03g24400OsAffx.3306.1.S1_at10/113+13872174..13873937hypothetical protein
LOC_Os03g24400OsAffx.8626.1.S1_at1/113+13872174..13873937hypothetical protein
LOC_Os03g24410OsAffx.25204.1.S1_at11/113+13883541..13886129hypothetical protein
LOC_Os03g24420OsAffx.3307.1.S1_at11/113+13889373..13892968hypothetical protein
LOC_Os03g24430NANA3+13894821..13896338Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os03g24440OsAffx.25205.1.S1_at11/113+13901614..13902600cytokinin synthase, putative
LOC_Os03g24450Os.49124.1.S1_at10/113+13906387..13913938expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25204.1.S1_at--676--7551Chr03:13885269..13885293 (25 bp)
GTGGCCACCACTCTATCAAAATATT
LOC_Os03g24410
OsAffx.25204.1.S1_at--1068--10211Chr03:13885290..13885314 (25 bp)
TATTGCGCATACTTGATGGTTTCCG
LOC_Os03g24410
OsAffx.25204.1.S1_at--185--3311Chr03:13885318..13885342 (25 bp)
CACGGCTACTCCATAGACACGAAAT
LOC_Os03g24410
OsAffx.25204.1.S1_at--1045--5111Chr03:13885371..13885395 (25 bp)
GCACAGGCGGCAAGGATATCACTAT
LOC_Os03g24410
OsAffx.25204.1.S1_at--936--6131Chr03:13885455..13885479 (25 bp)
GAGGGAGCCCGCATATTCCAAGAGG
LOC_Os03g24410
OsAffx.25204.1.S1_at--875--2931Chr03:13885548..13885572 (25 bp)
AAGGCATTGGTCTATGCTGCACCAT
LOC_Os03g24410
OsAffx.25204.1.S1_at--474--611Chr03:13885561..13885585 (25 bp)
ATGCTGCACCATCCGACAATGTGGA
LOC_Os03g24410
OsAffx.25204.1.S1_at--1003--1351Chr03:13885586..13885610 (25 bp)
AGAGCACATAGAGCACCTCGCTAAG
LOC_Os03g24410
OsAffx.25204.1.S1_at--384--1751Chr03:13885630..13885654 (25 bp)
ACCTATGGGCTCTGTTGTCTCATGC
LOC_Os03g24410
OsAffx.25204.1.S1_at--191--9531Chr03:13885647..13885671 (25 bp)
TCTCATGCCGGCATCCTAAAGTGGA
LOC_Os03g24410
OsAffx.25204.1.S1_at--84--6251Chr03:13886070..13886094 (25 bp)
GATGGACCAGCAACCGATACTGATT
LOC_Os03g24410
Target Sequence 
GTGGCCACCACTCTATCAAAATATTGCGCATACTTGATGGTTTCCGCGCCACGGCTACTCCATAGACACGAAATAGGAAC
TAAGTCTGTGTACAGCCAAGTTGCACAGGCGGCAAGGATATCACTATACGGAGCGAAAGACAAATTGGATGCAATGAGAA
GGCTAGGGAAAGATGATGAACCAAGTGAGGGAGCCCGCATATTCCAAGAGGGTGTGGCATTTGGGAAGCAACTAGAAACA
ATGCCTAAGCGTTGGGAGGTGCTAGCAAATTTTTGGATAAAGGCATTGGTCTATGCTGCACCATCCGACAATGTGGAAGA
GCACATAGAGCACCTCGCTAAGGGTGGCGAGTTCATCACCCACCTATGGGCTCTGTTGTCTCATGCCGGCATCCTAAAGT
GGAGAGGTGGATCAACAAATTATGATGAATCACCATATAAATTAAGTGAATCAACAAATGATGACAGTGAATCAGAAGAT
GAATATGATGGACCAGCAACCGATACTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis