Browse Element(s) Details


OsAffx.25206.1.S1_at

Description tigr:9631.m02386
TID=OsAffx.25206.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2448011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24450Os.49124.1.S1_at10/113+13906387..13913938expressed protein
LOC_Os03g24460Os.26468.1.S2_at10/113+13920266..13927614branched-chain amino acid aminotransferase, putative, expressed
LOC_Os03g24460Os.26468.1.S1_at10/113+13920266..13927614branched-chain amino acid aminotransferase, putative, expressed
LOC_Os03g24470OsAffx.13003.1.S1_at11/113+13929299..13929569hypothetical protein
LOC_Os03g24480OsAffx.25206.1.S1_at11/113+13932055..13933802hypothetical protein
LOC_Os03g24490Os.47463.1.S1_x_at4/113+13934739..13943909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g24490Os.14491.2.S1_x_at4/113+13934739..13943909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g24500OsAffx.3308.1.S1_at11/113+13945187..13946610hypothetical protein
LOC_Os03g24510Os.53356.1.S1_at11/113+13948943..13950640galactinol synthase, putative, expressed
LOC_Os03g24520Os.17928.1.S1_at11/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24520Os.56130.1.S1_at9/113+13953834..13960354HEAT repeat family protein, expressed
LOC_Os03g24520Os.35897.2.S1_x_at1/113+13953834..13960354HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25206.1.S1_at--755--3651Chr03:13932210..13932347 (25 bp)
CTTCTACTTCGTGGGCGCGACCGAG
LOC_Os03g24480
OsAffx.25206.1.S1_at--735--7171Chr03:13932942..13932964 (23 bp)
GTCTGCGGCCCTGGACTCAGAAGGA
LOC_Os03g24480
OsAffx.25206.1.S1_at--445--1471Chr03:13932958..13932982 (25 bp)
AGAAGGAGCCTTGCCACTAGTAACC
LOC_Os03g24480
OsAffx.25206.1.S1_at--633--3311Chr03:13932972..13932996 (25 bp)
CACTAGTAACCCTACGTGGACAAGT
LOC_Os03g24480
OsAffx.25206.1.S1_at--1127--8131Chr03:13932989..13933013 (25 bp)
GGACAAGTTGGATCAGAGACACGAA
LOC_Os03g24480
OsAffx.25206.1.S1_at--657--1411Chr03:13933005..13933029 (25 bp)
AGACACGAATCGTCGCTAGCCAAAG
LOC_Os03g24480
OsAffx.25206.1.S1_at--918--4391Chr03:13933023..13933047 (25 bp)
GCCAAAGCGGTTGTCAGGCTGTGAT
LOC_Os03g24480
OsAffx.25206.1.S1_at--453--3291Chr03:13933504..13933528 (25 bp)
CAAAGGCGACGGACGGCGATGAATA
LOC_Os03g24480
OsAffx.25206.1.S1_at--903--6611Chr03:13933557..13933581 (25 bp)
GTTGGCACCGAACATAGACCGACCA
LOC_Os03g24480
OsAffx.25206.1.S1_at--480--5491Chr03:13933605..13933629 (25 bp)
GAACAGTGGGTTCATGGCACCAATG
LOC_Os03g24480
OsAffx.25206.1.S1_at--420--6751Chr03:13933614..13933638 (25 bp)
GTTCATGGCACCAATGTGGTTTCTT
LOC_Os03g24480
Target Sequence 
CTTCTACTTCGTGGGCGCGACCGAGCTGCGTATGGCGCGCAGGTTCACCCGCATCTCCGACCTGTCTGCGGCCCTGGACT
CAGAAGGAGCCTTGCCACTAGTAACCCTACGTGGACAAGTTGGATCAGAGACACGAATCGTCGCTAGCCAAAGCGGTTGT
CAGGCTGTGATAGCTGAGCAACAAGTACGACAACATTGCAAGACAAAGCATGTAACGAAGTCAGCAAAGACAAAGATCAA
CGAGAAGGATGGTGAGGAATTCTTGGTGTTAAGGAGGACAAAGGCGACGGACGGCGATGAATACTTGGTCGTAAAGAGGA
CAAGGGTAAAGGTTGGCACCGAACATAGACCGACCAAGAGGGTGAGGGACATAGATGTTGAACAGTGGGTTCATGGCACC
AATGTGGTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis