Browse Element(s) Details


OsAffx.25247.2.S1_x_at

Description tigr:9631.m02683
TID=OsAffx.25247.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative metacaspase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2721010/11latex-abundant family protein, putative
LOC_Os03g271702/11latex-abundant family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27160OsAffx.25246.1.S1_x_at9/113+15539250..15541323hypothetical protein
LOC_Os03g27160Os.41248.2.A1_at6/113+15539250..15541323hypothetical protein
LOC_Os03g27160Os.41248.5.S1_x_at6/113+15539250..15541323hypothetical protein
LOC_Os03g27170OsAffx.25247.1.S1_x_at11/113+15542231..15543689latex-abundant family protein, putative, expressed
LOC_Os03g27170OsAffx.25247.2.S1_x_at2/113+15542231..15543689latex-abundant family protein, putative, expressed
LOC_Os03g27190Os.27226.1.S1_at10/113+15546661..15550897ICE-like protease p20 domain containing protein, expressed
LOC_Os03g27200OsAffx.13071.1.S1_at7/113+15562084..15562526expressed protein
LOC_Os03g27210OsAffx.25247.2.S1_x_at10/113+15563787..15565680latex-abundant family protein, putative
LOC_Os03g27210OsAffx.25247.1.S1_x_at3/113+15563787..15565680latex-abundant family protein, putative
LOC_Os03g27230Os.7075.1.S1_at11/113+15582592..15587514Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006917biological_processinduction of apoptosis
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0030693molecular_functioncaspase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25247.2.S1_x_at--797--6452Chr03:15564962..15564986 (25 bp)
GATCAACGAGACCATCGTCCGGCCA
LOC_Os03g27210
OsAffx.25247.2.S1_x_at--989--7351Chr03:15564925..15564949 (25 bp)
GTGAAGCTCCATGCCATCGTGGACA
LOC_Os03g27210
OsAffx.25247.2.S1_x_at--184--914Chr08:23977396..23977419 (24 bp)
AGGCTACTGGCAGTGGGAGAACCAC
NONE
OsAffx.25247.2.S1_x_at--51--4111NONE
CGACACCACGGCGTTCTCCGGCGGC
NONE
OsAffx.25247.2.S1_x_at--317--4091Chr03:15563998..15564022 (25 bp)
CGACGGGGGCCATGACGTACAGCTT
LOC_Os03g27210
OsAffx.25247.2.S1_x_at--1013--9111Chr03:15563929..15563953 (25 bp)
TGCTGAGCGCGATGCGGGCGACCAT
LOC_Os03g27210
OsAffx.25247.2.S1_x_at--706--10551Chr03:15563858..15563882 (25 bp)
TTCTTCCGGAGGGTCATCACCTTCA
LOC_Os03g27210
OsAffx.25247.2.S1_x_at--805--10651Chr03:15563855..15563879 (25 bp)
TTCCGGAGGGTCATCACCTTCAGCT
LOC_Os03g27210
OsAffx.25247.2.S1_x_at--829--392Chr11:1852527..1852704 (25 bp)
ATCACCTTCAGCTGCGCGCAGGAGC
NONE
OsAffx.25247.2.S1_x_at--653--4771Chr03:15563833..15563857 (25 bp)
GCTGCGCGCAGGAGCCCCAGCTGTG
LOC_Os03g27210
OsAffx.25247.2.S1_x_at--662--4351Chr03:15563817..15563841 (25 bp)
CCAGCTGTGCGCCTCGGAGCCGTTT
LOC_Os03g27210
Target Sequence 
GATCAACGAGACCATCGTCCGGCCACTCGTCGCCGGCGTGAAGCTCCATGCCATCGTGGACACGTGCCACAGCGGCACCA
TCCTGGACCTCCCCTTCCTCTGCCGCCTCTCCCGGACAGGCTACTGGCAGTGGGAGAACCACTGCCGCCGGCCGGAGCTG
GCCAAGGGCACCAGCGGCGGCCTCGCCATCTCCATCAGCGGCTGCGGCGACAGCCAGACCTCCTCCGACACCACGGCGTT
CTCCGGCGGCGCGGCGACGGGGGCCATGACGTACAGCTTCATCAAGGCGGTGGAGACGGAGCCAGGGACGACGTACGGGC
GGCTGCTGAGCGCGATGCGGGCGACCATCCGCGGCGGCGGCGGCGAGGTCGGCATCCCGGGGCCACTGGGCGCCTTCTTC
CGGAGGGTCATCACCTTCAGCTGCGCGCAGGAGCCCCAGCTGTGCGCCTCGGAGCCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25247.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis