Browse Element(s) Details


OsAffx.25255.1.S1_at

Description tigr:9631.m02719
TID=OsAffx.25255.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative serine carboxypeptidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2753010/11Retinoid-inducible serine carboxypeptidase precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27480Os.54354.1.S1_at10/113+15742324..15746072Serine carboxypeptidase family protein, expressed
LOC_Os03g27484NANA3+15749223..15751936hypothetical protein
LOC_Os03g27490OsAffx.13076.1.S1_at11/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29308.1.S1_x_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29823.1.S1_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29823.1.S1_x_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27510OsAffx.3344.1.S1_at11/113+15758873..15763677serine carboxypeptidase S10 family protein, putative
LOC_Os03g27520OsAffx.9572.1.S1_at1/113+15765275..15767372transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27530OsAffx.25255.1.S1_at10/113+15768495..15775420Retinoid-inducible serine carboxypeptidase precursor, putative
LOC_Os03g27540NANA3+15776756..15779725transposon protein, putative, Pong sub-class, expressed
LOC_Os03g27550NANA3+15780048..15780673serine carboxypeptidase S10 family protein, putative
LOC_Os03g27560OsAffx.10931.3.S1_at11/113+15785028..15785884hypothetical protein
LOC_Os03g27570OsAffx.13079.1.S1_at9/113+15789001..15789291hypothetical protein
LOC_Os03g27580OsAffx.13079.1.S1_at11/113+15790978..15791835hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25255.1.S1_at--1131--9651Chr03:15771074..15771098 (25 bp)
TCACGGGCCTTATCGATCTGATCGA
LOC_Os03g27530
OsAffx.25255.1.S1_at--288--10531Chr03:15770856..15770880 (25 bp)
TTCTTGTTTAACACCAGCGGCGTAG
LOC_Os03g27530
OsAffx.25255.1.S1_at--1027--2731Chr03:15770798..15770822 (25 bp)
AAGAAGTCCGTGGATCGCCGTTGAT
LOC_Os03g27530
OsAffx.25255.1.S1_at--646--2451NONE
AACAACCTCGTGTGGCAACTGGCGA
NONE
OsAffx.25255.1.S1_at--584--7231Chr03:15770550..15770574 (25 bp)
GTCGCTGTTTTCAACGCGCTGGAGA
LOC_Os03g27530
OsAffx.25255.1.S1_at--671--1551Chr03:15770396..15770420 (25 bp)
AGCTATTATCTCTGGGTGTCAACGT
LOC_Os03g27530
OsAffx.25255.1.S1_at--878--791Chr03:15770116..15770384 (25 bp)
ATGGGCAACGCTATACGCACACTAT
LOC_Os03g27530
OsAffx.25255.1.S1_at--668--1131Chr03:15770086..15770110 (25 bp)
AGTGCGAGCTGCTTATCTGTGCCAT
LOC_Os03g27530
OsAffx.25255.1.S1_at--160--1451Chr03:15769145..15769169 (25 bp)
AGAACCCATGCACTATTTCTGCTAT
LOC_Os03g27530
OsAffx.25255.1.S1_at--149--7831Chr03:15769117..15769141 (25 bp)
GGTCACGATAGTACTGCCTTCAGGA
LOC_Os03g27530
OsAffx.25255.1.S1_at--114--5431Chr03:15769082..15769106 (25 bp)
GAACCTGCAGTACTATTGGATCCTT
LOC_Os03g27530
Target Sequence 
TCACGGGCCTTATCGATCTGATCGACAAAAGTAGTGGCGGCGTTAATATTTTCAATTTCTTGTTTAACACCAGCGGCGTA
GATCTGCGAGTGCTAGCTGCAGAGGACAAACAAAAAGAAGTCCGTGGATCGCCGTTGATGAGGTTTGTCGGGCAGGACTT
GTCGGGGTCGTCTGGCCCCAACACGATCGAGGGCATCATGAACGGTGTCATCAAGGAAAAGCTCAAGATCATCCCCAACA
ACCTCGTGTGGCAACTGGCGACGGTCGCTGTTTTCAACGCGCTGGAGAACGAATTCATGAAGCCAGCAATAAACGAGGTA
GATGAGCTATTATCTCTGGGTGTCAACGTCACAGTGTACAATGGGCAACGCTATACGCACACTATTGAGCAGTGCGAGCT
GCTTATCTGTGCCATGGGTTTGGTTGGATGGAATGGACTAAATGACTTCTTTAGAGTGCTTAGAGAACCCATGCACTATT
TCTGCTATCCCGGTCACGATAGTACTGCCTTCAGGAGGATATACAAGAACCTGCAGTACTATTGGATCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis