Browse Element(s) Details


OsAffx.25263.1.S1_at

Description tigr:9631.m02773
TID=OsAffx.25263.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2803010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28010Os.7307.3.S1_x_at4/113+16072033..16081962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g28020Os.7307.3.S1_x_at1/113+16083440..16087442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g28030OsAffx.25263.1.S1_at10/113+16092365..16093935hypothetical protein
LOC_Os03g28030OsAffx.28894.1.S1_at1/113+16092365..16093935hypothetical protein
LOC_Os03g28040OsAffx.25264.1.S1_at11/113+16096028..16096471Zinc finger, C3HC4 type family protein
LOC_Os03g28050OsAffx.3352.1.S1_at11/113+16100399..16100959hypothetical protein
LOC_Os03g28060OsAffx.15837.1.S1_at7/113+16109096..16112058transposon protein, putative, Mutator sub-class
LOC_Os03g28070OsAffx.27021.1.S1_at10/113+16112355..16113535hypothetical protein
LOC_Os03g28080NANA3+16114718..16115731Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25263.1.S1_at--871--5071Chr03:16093868..16093892 (25 bp)
GCAGCCAGCGCAGCAAGCGTTGGTG
LOC_Os03g28030
OsAffx.25263.1.S1_at--149--3751Chr03:16093796..16093820 (25 bp)
CTCACCAGGCGCACTGTGGACGGTG
LOC_Os03g28030
OsAffx.25263.1.S1_at--687--1651Chr03:16093745..16093769 (25 bp)
AGCGCCGAGACGGAGGCAGCTTGAT
LOC_Os03g28030
OsAffx.25263.1.S1_at--844--3391Chr03:16093729..16093753 (25 bp)
CAGCTTGATGAAGCCTGGAGGCGGA
LOC_Os03g28030
OsAffx.25263.1.S1_at--435--6931NONE
GTAGTGGTGAGGTTATATGATGATC
NONE
OsAffx.25263.1.S1_at--421--3891Chr03:16092444..16092468 (25 bp)
CTGGAAGCTTGGTGGGCTTTTTGCA
LOC_Os03g28030
OsAffx.25263.1.S1_at--767--7351Chr03:16092433..16092457 (25 bp)
GTGGGCTTTTTGCAGCCCCGAGATA
LOC_Os03g28030
OsAffx.25263.1.S1_at--431--10271Chr03:16092425..16092449 (25 bp)
TTTGCAGCCCCGAGATATCCATCAA
LOC_Os03g28030
OsAffx.25263.1.S1_at--462--6511Chr03:16092412..16092436 (25 bp)
GATATCCATCAACAATCCTGGGCTG
LOC_Os03g28030
OsAffx.25263.1.S1_at--862--371Chr03:16092405..16092429 (25 bp)
ATCAACAATCCTGGGCTGGCAAGCT
LOC_Os03g28030
OsAffx.25263.1.S1_at--1159--3171Chr03:16092400..16092424 (25 bp)
CAATCCTGGGCTGGCAAGCTACGGA
LOC_Os03g28030
Target Sequence 
GCAGCCAGCGCAGCAAGCGTTGGTGGCGAGGTTGCGGCTACGGCCGCTGCAGCGGCGAAATCCACACCGCCGCTCACCAG
GCGCACTGTGGACGGTGGCGCTCGTCGGGGCCGCAGCGGAGGCAGCGCCGAGACGGAGGCAGCTTGATGAAGCCTGGAGG
CGGAGGGCGGAGGCGCGCGATGGAGGCGAAGGCCGAGCGCGATGGATGGGGTGGGAATGGATTTGAGGTGGCGCTGGTAG
TGGTGAGGTTATATGATGATCAATTTGAGAAATTTTGTATTCTATTATATGATGATCAATTTGAGAAGGAGAAGCAAGGA
GCTGGAAGCTTGGTGGGCTTTTTGCAGCCCCGAGATATCCATCAACAATCCTGGGCTGGCAAGCTACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis