Browse Element(s) Details


OsAffx.3352.1.S1_at

Description tigr:9631.m02775
TID=OsAffx.3352.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2805011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28010Os.7307.3.S1_x_at4/113+16072033..16081962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g28020Os.7307.3.S1_x_at1/113+16083440..16087442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g28030OsAffx.25263.1.S1_at10/113+16092365..16093935hypothetical protein
LOC_Os03g28030OsAffx.28894.1.S1_at1/113+16092365..16093935hypothetical protein
LOC_Os03g28040OsAffx.25264.1.S1_at11/113+16096028..16096471Zinc finger, C3HC4 type family protein
LOC_Os03g28050OsAffx.3352.1.S1_at11/113+16100399..16100959hypothetical protein
LOC_Os03g28060OsAffx.15837.1.S1_at7/113+16109096..16112058transposon protein, putative, Mutator sub-class
LOC_Os03g28070OsAffx.27021.1.S1_at10/113+16112355..16113535hypothetical protein
LOC_Os03g28080NANA3+16114718..16115731Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3352.1.S1_at--576--5071Chr03:16100905..16100929 (25 bp)
GCACCACATTTGAGGCACTGTCTGG
LOC_Os03g28050
OsAffx.3352.1.S1_at--84--6211Chr03:16100894..16100918 (25 bp)
GAGGCACTGTCTGGGCTTTGGACCT
LOC_Os03g28050
OsAffx.3352.1.S1_at--49--10251Chr03:16100878..16100902 (25 bp)
TTTGGACCTTGCGTCGGAGCAACAG
LOC_Os03g28050
OsAffx.3352.1.S1_at--429--3971Chr03:16100844..16100868 (25 bp)
CGGTTCATCATGGACAGGCGACGTT
LOC_Os03g28050
OsAffx.3352.1.S1_at--319--7631Chr03:16100670..16100694 (25 bp)
GGGAGCCAATGATATCCGACCCCGT
LOC_Os03g28050
OsAffx.3352.1.S1_at--690--1451Chr03:16100634..16100658 (25 bp)
AGAAGGAGGTGATCCCTCTTCCTAA
LOC_Os03g28050
OsAffx.3352.1.S1_at--420--371Chr03:16100586..16100610 (25 bp)
ATCAATGTCTTGCTTGGCCTTCCAA
LOC_Os03g28050
OsAffx.3352.1.S1_at--775--8431Chr03:16100571..16100595 (25 bp)
GGCCTTCCAACATCTTTCATGGATG
LOC_Os03g28050
OsAffx.3352.1.S1_at--1052--7991Chr03:16100551..16100575 (25 bp)
GGATGTCTTCCAAGTGCTCATGGAC
LOC_Os03g28050
OsAffx.3352.1.S1_at--249--2791Chr03:16100466..16100490 (25 bp)
AAGAGTTGGCCGCTAGCATGCATAT
LOC_Os03g28050
OsAffx.3352.1.S1_at--529--4991Chr03:16100441..16100465 (25 bp)
GCATGTCTCACATGAGTCCAACTCA
LOC_Os03g28050
Target Sequence 
GCACCACATTTGAGGCACTGTCTGGGCTTTGGACCTTGCGTCGGAGCAACAGATGAAGCTACGGTTCATCATGGACAGGC
GACGTTGCCGCTCCCGAGGGCGGTACTCCGGTACGAGTACATGAGGTGGGGGGAGCCAATGATATCCGACCCCGTCACGC
TGTTGGAGAAGGAGGTGATCCCTCTTCCTAATGCACGGCAAGGAGAGAAAGAGCATCAATGTCTTGCTTGGCCTTCCAAC
ATCTTTCATGGATGTCTTCCAAGTGCTCATGGACGGGGGAGGGCGCGTGACACGGGGGAGGGGGAGGGGGATGGGGAGGG
GGGAGAGGAGGGAGAAGAGTTGGCCGCTAGCATGCATATGCATGTCTCACATGAGTCCAACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis