Browse Element(s) Details


OsAffx.25265.2.S1_x_at

Description tigr:9631.m02784
TID=OsAffx.25265.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative phosphatidylinositol 3,5-kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2814010/11phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28110NANA3+16137629..16141894retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g28120OsAffx.16146.2.S1_at11/113+16142751..16145812hypothetical protein
LOC_Os03g28120Os.52782.1.S1_at1/113+16142751..16145812hypothetical protein
LOC_Os03g28130Os.45248.1.S1_at11/113+16150093..16151610F-box protein, putative, expressed
LOC_Os03g28140OsAffx.25265.2.S1_x_at10/113+16160784..16171511phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os03g28140OsAffx.6175.1.S1_at2/113+16160784..16171511phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os03g28160NANA3+16187906..16188593Jacalin-like lectin domain containing protein, expressed
LOC_Os03g28170Os.33673.1.A1_at8/113+16193255..16193966hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25265.2.S1_x_at--181--5511Chr03:16162560..16162584 (25 bp)
GAAAATCTTCTGTTTGAACGTCATG
LOC_Os03g28140
OsAffx.25265.2.S1_x_at--887--6451Chr03:16162502..16162526 (25 bp)
GATCAAGATATAACCCCGACTCAAA
LOC_Os03g28140
OsAffx.25265.2.S1_x_at--483--1371Chr03:16162383..16162407 (25 bp)
AGAGCCGTTTGGAATGATACTGCAT
LOC_Os03g28140
OsAffx.25265.2.S1_x_at--986--4931NONE
GCATTCCTTGCTTCCATAGGTGTAA
NONE
OsAffx.25265.2.S1_x_at--720--7931Chr03:16161051..16161075 (25 bp)
GGATTACTCTTTACTTGTTGGTGTT
LOC_Os03g28140
OsAffx.25265.2.S1_x_at--1003--1731Chr03:16160939..16160963 (25 bp)
ACCTCAGGAATATTGGGCGGACCAA
LOC_Os03g28140
OsAffx.25265.2.S1_x_at--1054--8351Chr03:16160924..16160948 (25 bp)
GGCGGACCAAAGAATGTTGCACCTA
LOC_Os03g28140
OsAffx.25265.2.S1_x_at--214--6671Chr03:16160909..16160933 (25 bp)
GTTGCACCTACAGTAATATCACCGA
LOC_Os03g28140
OsAffx.25265.2.S1_x_at--1017--7211Chr03:16160853..16160877 (25 bp)
GTCGACTTACTTTCTTGTTGTTCCA
LOC_Os03g28140
OsAffx.25265.2.S1_x_at--517--6631Chr03:16160837..16160861 (25 bp)
GTTGTTCCAGATCAGTGGTCACCTC
LOC_Os03g28140
OsAffx.25265.2.S1_x_at--615--9211Chr03:16160814..16160838 (25 bp)
TCCAGCAGTAGTCCCTAGCAAGCAA
LOC_Os03g28140
Target Sequence 
GAAAATCTTCTGTTTGAACGTCATGTGACAAGATTGTATGATTTAAAGGGATCTACAAGATCAAGATATAACCCCGACTC
AAATGGTAGCAATAAAGTACTTCTTGATCAGAACTTACTTGAAGCTATGCCAACCTCCCCCATTTTTGTTGGGAACAAGG
CAAAGCGGCTGCTAGAGAGAGCCGTTTGGAATGATACTGCATTCCTTGCTTCCATAGGTGTAATGGATTACTCTTTACTT
GTTGGTGTTGATGAGAAGAAGCATGAACTTGTGATGGGCATCATAGATTTTATGAGGCAATATACATGGGACAAACATCT
AGAGACATGGGTGAAAACCTCAGGAATATTGGGCGGACCAAAGAATGTTGCACCTACAGTAATATCACCGAAGCAGTACA
AGATGAGGTTCAGAAAAGCCATGTCGACTTACTTTCTTGTTGTTCCAGATCAGTGGTCACCTCCAGCAGTAGTCCCTAGC
AAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25265.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis