Browse Element(s) Details


OsAffx.25291.1.S1_at

Description tigr:9631.m02937
TID=OsAffx.25291.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3005011/11protein kinase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30010OsAffx.13116.1.S1_at11/113+17074336..17076326hypothetical protein
LOC_Os03g30020OsAffx.13117.1.S1_at11/113+17081360..17082120hypothetical protein
LOC_Os03g30030NANA3+17089307..17090821retrotransposon, putative, centromere-specific
LOC_Os03g30040OsAffx.28308.2.S1_x_at1/113+17092741..17093572retrotransposon, putative, centromere-specific
LOC_Os03g30050OsAffx.25291.1.S1_at11/113+17095925..17096698protein kinase family protein, putative
LOC_Os03g30060Os.53882.1.S1_at11/113+17097935..17099337expressed protein
LOC_Os03g30070NANA3+17102286..17105618transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30080Os.14491.2.S1_x_at5/113+17107202..17112018transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30080Os.47463.1.S1_x_at5/113+17107202..17112018transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30084OsAffx.5807.1.S1_at1/113+17114433..17115134hypothetical protein
LOC_Os03g30088OsAffx.25292.1.S1_at11/113+17116893..17120104hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25291.1.S1_at--618--5831Chr03:17096147..17096171 (25 bp)
GACCTGTACATGGATGGCCTGGCCA
LOC_Os03g30050
OsAffx.25291.1.S1_at--341--1771Chr03:17096148..17096172 (25 bp)
ACCTGTACATGGATGGCCTGGCCAT
LOC_Os03g30050
OsAffx.25291.1.S1_at--847--2111Chr03:17096154..17096178 (25 bp)
ACATGGATGGCCTGGCCATCGGCGA
LOC_Os03g30050
OsAffx.25291.1.S1_at--896--9491Chr03:17096472..17096496 (25 bp)
TCTCCGGCGACATCATCTGCAAGGT
LOC_Os03g30050
OsAffx.25291.1.S1_at--801--9271Chr03:17096474..17096498 (25 bp)
TCCGGCGACATCATCTGCAAGGTCT
LOC_Os03g30050
OsAffx.25291.1.S1_at--461--8391Chr03:17096477..17096501 (25 bp)
GGCGACATCATCTGCAAGGTCTCGC
LOC_Os03g30050
OsAffx.25291.1.S1_at--752--2091Chr03:17096481..17096505 (25 bp)
ACATCATCTGCAAGGTCTCGCCGCA
LOC_Os03g30050
OsAffx.25291.1.S1_at--273--471Chr03:17096486..17096510 (25 bp)
ATCTGCAAGGTCTCGCCGCATCCAT
LOC_Os03g30050
OsAffx.25291.1.S1_at--470--1031Chr03:17096493..17096517 (25 bp)
AGGTCTCGCCGCATCCATGCGCAGG
LOC_Os03g30050
OsAffx.25291.1.S1_at--289--1031Chr03:17096642..17096666 (25 bp)
AGGTCACCGCTCTTCGCTGCTAGTG
LOC_Os03g30050
OsAffx.25291.1.S1_at--161--7111Chr03:17096644..17096668 (25 bp)
GTCACCGCTCTTCGCTGCTAGTGTG
LOC_Os03g30050
Target Sequence 
GACCTGTACATGGATGGCCTGGCCATCGGCGACTCCCACGCGTGCGGCCTCCCCCGGCCAAACCACACCGCCACGTGCTG
GAGCCTCGGGTGCGACACCACCACGCTCTACTACCCGGCGGTCAGCACGACGTTCGAGCTCCTCGTCGCCGGTGGTAACC
TCACATGCGGCCTCGTGTCGACCAACTTCAGCTTGCTCTGCTGGTCGATGGATGGGTTGATGGCGGCGGAGGTGAATCTG
CCGTCGATCCTCCCCGGCGTCTGCGTCTCTGACAACAGCTCGTGCAAATGCGGCCTGTTCCCGGACTCCGGGAGGTTCTG
CAAGGTCTCCGGCGACATCATCTGCAAGGTCTCGCCGCATCCATGCGCAGGGCGGGGAGAGGAGCGGAGGTGGAGATGGA
CGCTGCGGCGGTGCTCAATCGACCAATCGACCAAGCCACCGCCGCCGCCGACTCCTTCCCGCGTCCTCCACCGGCCCCGC
GGCGACACCCTTCCCAGGTCACCGCTCTTCGCTGCTAGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis