Browse Element(s) Details


OsAffx.25292.1.S1_at

Description tigr:9631.m02941
TID=OsAffx.25292.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3008811/11hypothetical protein
LOC_Os12g091641/11hypothetical protein
LOC_Os10g023141/11hypothetical protein
LOC_Os03g297101/11hypothetical protein
LOC_Os01g411001/11hypothetical protein
LOC_Os04g393101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30040OsAffx.28308.2.S1_x_at1/113+17092741..17093572retrotransposon, putative, centromere-specific
LOC_Os03g30050OsAffx.25291.1.S1_at11/113+17095925..17096698protein kinase family protein, putative
LOC_Os03g30060Os.53882.1.S1_at11/113+17097935..17099337expressed protein
LOC_Os03g30070NANA3+17102286..17105618transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30080Os.14491.2.S1_x_at5/113+17107202..17112018transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30080Os.47463.1.S1_x_at5/113+17107202..17112018transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30084OsAffx.5807.1.S1_at1/113+17114433..17115134hypothetical protein
LOC_Os03g30088OsAffx.25292.1.S1_at11/113+17116893..17120104hypothetical protein
LOC_Os03g30092Os.50865.1.S1_at10/113+17127395..17129107expressed protein
LOC_Os03g30100NANA3+17133846..17136361retrotransposon protein, putative, unclassified
LOC_Os03g30110OsAffx.20387.1.S1_x_at1/113+17136589..17143197retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25292.1.S1_at--405--1792Chr12:21602401..21602425 (25 bp)
ACCGATGCTGCTTCTACACGTGCGC
NONE
OsAffx.25292.1.S1_at--342--9852Chr12:21602387..21602411 (25 bp)
TACACGTGCGCCTGATCAGGAAGCT
NONE
OsAffx.25292.1.S1_at--842--4552Chr12:21602380..21602404 (25 bp)
GCGCCTGATCAGGAAGCTAATTAAT
NONE
OsAffx.25292.1.S1_at--996--4832Chr12:21602365..21602389 (25 bp)
GCTAATTAATGGCTTTGATCAGTCA
NONE
OsAffx.25292.1.S1_at--224--8312Chr12:21602355..21602379 (25 bp)
GGCTTTGATCAGTCATATAACCAAG
NONE
OsAffx.25292.1.S1_at--57--1711Chr03:17119980..17120004 (25 bp)
ACCAAGACACCGTTATATATGACAA
LOC_Os03g30088
OsAffx.25292.1.S1_at--1056--8151Chr03:17119955..17119979 (25 bp)
GGAAAAACAGATATTCGCATGGTCT
LOC_Os03g30088
OsAffx.25292.1.S1_at--1107--6511Chr03:17119946..17119970 (25 bp)
GATATTCGCATGGTCTGATCTTTAT
LOC_Os03g30088
OsAffx.25292.1.S1_at--805--4111Chr03:17119940..17119964 (25 bp)
CGCATGGTCTGATCTTTATAAATAT
LOC_Os03g30088
OsAffx.25292.1.S1_at--906--10731Chr03:17117590..17117614 (25 bp)
TTGCAGATTATACGCCTTCTCGATC
LOC_Os03g30088
OsAffx.25292.1.S1_at--88--48130Chr12:4328605..4329039 (25 bp)
GCTCGAGAACGGGAGTTCCGGATAA
NONE
Target Sequence 
ACCGATGCTGCTTCTACACGTGCGCCTGATCAGGAAGCTAATTAATGGCTTTGATCAGTCATATAACCAAGACACCGTTA
TATATGACAAGGAAAAACAGATATTCGCATGGTCTGATCTTTATAAATATGTGAACGAAGGAAAATTCTATTTGACAATG
TTGAAGACTTCATGTCTCTATGGTTCTACACCAAGATCGACTAATGCGAGTACGACAAATGTTGACAAGGCTTCGTTGCA
GATTATACGCCTTCTCGATCGCTCGAGAACGGGAGTTCCGGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis