Browse Element(s) Details


OsAffx.25300.1.S1_at

Description tigr:9631.m02999
TID=OsAffx.25300.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative NADH ubiquinone oxidoreductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3061011/11NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os01g522142/11NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30570Os.18087.1.S1_at11/113+17404319..17407530expressed protein
LOC_Os03g30580Os.52069.1.S1_at10/113+17408100..17411833expressed protein
LOC_Os03g30590OsAffx.13132.1.S1_at11/113+17413611..17414471hypothetical protein
LOC_Os03g30600OsAffx.31801.3.S1_at11/113+17415705..17416917hypothetical protein
LOC_Os03g30610OsAffx.25300.1.S1_at11/113+17419371..17419779NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os03g30610Os.35752.3.S1_x_at2/113+17419371..17419779NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os03g30610Os.35752.3.S1_at1/113+17419371..17419779NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os03g30620OsAffx.3372.1.S1_at11/113+17421248..17422192hypothetical protein
LOC_Os03g30630OsAffx.25301.1.S1_at11/113+17424155..17424775expressed protein
LOC_Os03g30640OsAffx.3373.1.S1_at11/113+17426287..17427090hypothetical protein
LOC_Os03g30650OsAffx.25302.1.S1_at11/113+17428163..17429788hypothetical protein
LOC_Os03g30650OsAffx.25302.2.S1_at1/113+17428163..17429788hypothetical protein
LOC_Os03g30660OsAffx.25302.2.S1_at11/113+17432403..17433119hypothetical protein
LOC_Os03g30670NANA3+17436568..17436930hypothetical protein
LOC_Os03g30680OsAffx.25303.1.S1_at11/113+17438020..17438877hypothetical protein
LOC_Os03g30690OsAffx.25304.1.S1_at11/113+17440773..17441603hypothetical protein
LOC_Os03g30700OsAffx.661.1.S1_x_at1/113+17442787..17445432retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0005739cellular_componentmitochondrion
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25300.1.S1_at--870--1311Chr03:17419513..17419534 (22 bp)
AGATGGTGCCCGCGCTCCGCAAAGC
LOC_Os03g30610
OsAffx.25300.1.S1_at--948--3631Chr03:17419686..17419710 (25 bp)
CTTAATCCCCACCTTTAATGTCAAT
LOC_Os03g30610
OsAffx.25300.1.S1_at--6--3032Chr03:17419689..17419713 (25 bp)
AATCCCCACCTTTAATGTCAATTTG
LOC_Os03g30610
OsAffx.25300.1.S1_at--475--9291Chr03:17419691..17419715 (25 bp)
TCCCCACCTTTAATGTCAATTTGGA
LOC_Os03g30610
OsAffx.25300.1.S1_at--641--9771Chr03:17419701..17419725 (25 bp)
TAATGTCAATTTGGAAACTTGCCAC
LOC_Os03g30610
OsAffx.25300.1.S1_at--8--8173Chr03:17419713..17419737 (25 bp)
GGAAACTTGCCACAAATTCGACACT
LOC_Os03g30610
OsAffx.25300.1.S1_at--88--5552Chr03:17419714..17419738 (25 bp)
GAAACTTGCCACAAATTCGACACTA
LOC_Os03g30610
OsAffx.25300.1.S1_at--1038--2511Chr03:17419716..17419740 (25 bp)
AACTTGCCACAAATTCGACACTAGC
LOC_Os03g30610
OsAffx.25300.1.S1_at--870--4391Chr03:17419721..17419745 (25 bp)
GCCACAAATTCGACACTAGCACCAA
LOC_Os03g30610
OsAffx.25300.1.S1_at--471--3291Chr03:17419723..17419747 (25 bp)
CACAAATTCGACACTAGCACCAATG
LOC_Os03g30610
OsAffx.25300.1.S1_at--223--3291Chr03:17419725..17419749 (25 bp)
CAAATTCGACACTAGCACCAATGTT
LOC_Os03g30610
Target Sequence 
AGATGGTGCCCGCGCTCCGCAAAGCCTTAATCCCCACCTTTAATGTCAATTTGGAAACTTGCCACAAATTCGACACTAGC
ACCAATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis