Browse Element(s) Details


OsAffx.25303.1.S1_at

Description tigr:9631.m03006
TID=OsAffx.25303.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3068011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30590OsAffx.13132.1.S1_at11/113+17413611..17414471hypothetical protein
LOC_Os03g30600OsAffx.31801.3.S1_at11/113+17415705..17416917hypothetical protein
LOC_Os03g30610OsAffx.25300.1.S1_at11/113+17419371..17419779NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os03g30610Os.35752.3.S1_x_at2/113+17419371..17419779NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os03g30610Os.35752.3.S1_at1/113+17419371..17419779NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative
LOC_Os03g30620OsAffx.3372.1.S1_at11/113+17421248..17422192hypothetical protein
LOC_Os03g30630OsAffx.25301.1.S1_at11/113+17424155..17424775expressed protein
LOC_Os03g30640OsAffx.3373.1.S1_at11/113+17426287..17427090hypothetical protein
LOC_Os03g30650OsAffx.25302.1.S1_at11/113+17428163..17429788hypothetical protein
LOC_Os03g30650OsAffx.25302.2.S1_at1/113+17428163..17429788hypothetical protein
LOC_Os03g30660OsAffx.25302.2.S1_at11/113+17432403..17433119hypothetical protein
LOC_Os03g30670NANA3+17436568..17436930hypothetical protein
LOC_Os03g30680OsAffx.25303.1.S1_at11/113+17438020..17438877hypothetical protein
LOC_Os03g30690OsAffx.25304.1.S1_at11/113+17440773..17441603hypothetical protein
LOC_Os03g30700OsAffx.661.1.S1_x_at1/113+17442787..17445432retrotransposon protein, putative, unclassified
LOC_Os03g30710Os.56292.1.S1_x_at2/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.27691.1.S1_x_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.56292.1.S1_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710OsAffx.30013.5.S1_x_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30710Os.44554.1.A1_at1/113+17450744..17457945retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30720NANA3+17463193..17464386retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25303.1.S1_at--818--911Chr03:17438355..17438379 (25 bp)
AGGCTCCATCCTTGACGTCGGGAAC
LOC_Os03g30680
OsAffx.25303.1.S1_at--1099--10751Chr03:17438366..17438390 (25 bp)
TTGACGTCGGGAACCTCATCTCCGC
LOC_Os03g30680
OsAffx.25303.1.S1_at--687--6991Chr03:17438394..17438418 (25 bp)
GTACGACATCGTCGATCAGCCGCCA
LOC_Os03g30680
OsAffx.25303.1.S1_at--979--5751Chr03:17438437..17438461 (25 bp)
GACGGGCTACTCAACGATGCCATCA
LOC_Os03g30680
OsAffx.25303.1.S1_at--172--6991Chr03:17438535..17438559 (25 bp)
GTACCTCCATGTTCAACCGATCGAC
LOC_Os03g30680
OsAffx.25303.1.S1_at--1086--8211Chr03:17438588..17438612 (25 bp)
GGCAAGCGCAGCAGGCCAACTATTT
LOC_Os03g30680
OsAffx.25303.1.S1_at--206--1511Chr03:17438597..17438621 (25 bp)
AGCAGGCCAACTATTTCGCGACCGA
LOC_Os03g30680
OsAffx.25303.1.S1_at--1161--5811Chr03:17438616..17438640 (25 bp)
GACCGACGCGTTGGCGATGCTCAAC
LOC_Os03g30680
OsAffx.25303.1.S1_at--190--851Chr03:17438659..17438683 (25 bp)
ATGGACGCGATGGAGCTTATCCGCT
LOC_Os03g30680
OsAffx.25303.1.S1_at--199--6031Chr03:17438734..17438758 (25 bp)
GAGAGGTGCCTGCTCACGGCCATCA
LOC_Os03g30680
OsAffx.25303.1.S1_at--1092--10771Chr03:17438812..17438836 (25 bp)
TTGATGGACCAGACACTCCGTCAAG
LOC_Os03g30680
Target Sequence 
AGGCTCCATCCTTGACGTCGGGAACCTCATCTCCGCCGCGTACGACATCGTCGATCAGCCGCCACCAGATGCCCCCACCC
CCGACGGGCTACTCAACGATGCCATCACCGATCTCCAAGCCGCCTTCGCCGACGGGGGCCTCCTCACCAACGTCCGGAAT
CACTTCCACCACTGCGCCGCGTACCTCCATGTTCAACCGATCGACGCCGACCCGACGTGGACGGCGTGGACCGGGCAAGC
GCAGCAGGCCAACTATTTCGCGACCGACGCGTTGGCGATGCTCAACGTCGTCGCCTGGGAGGCCATGGACGCGATGGAGC
TTATCCGCTCCCACTGCCTGGTTCCGTCGCCGGAGCGCAACGAGCACATGAGGGAGCTCGAGAGGTGCCTGCTCACGGCC
ATCAAGTACATCGACAAGGCGATTGCGGCGGTGGGTCTCGTGCACGGCGAGGTGGAGTTGATGGACCAGACACTCCGTCA
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis