Browse Element(s) Details


OsAffx.2532.1.S1_at

Description tigr:9630.m00653
TID=OsAffx.2532.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to SLT1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0713010/11hypothetical protein
LOC_Os03g169101/11SLT1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07090NANA2+3645734..3647724transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07100Os.47463.1.S1_x_at6/112+3647845..3650789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07100Os.14491.2.S1_x_at5/112+3647845..3650789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07110NANA2+3655345..3655722Auxin responsive protein
LOC_Os02g07120Os.17204.1.S1_at11/112+3659130..3669320HEAT repeat family protein, expressed
LOC_Os02g07130OsAffx.2532.1.S1_at10/112+3669874..3670702hypothetical protein
LOC_Os02g07140OsAffx.2533.1.S1_at11/112+3673312..3673617hypothetical protein
LOC_Os02g07150Os.54746.1.S1_at11/112+3674672..3677959Urease accessory protein F, putative, expressed
LOC_Os02g07160Os.11995.1.S1_at10/112+3677463..36799484-hydroxyphenylpyruvate dioxygenase, putative, expressed
LOC_Os02g07170Os.55501.1.S1_at11/112+3682189..3684123myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g07180Os.54315.1.S1_at11/112+3687916..3691301expressed protein
LOC_Os02g07190OsAffx.2534.1.S1_at11/112+3694689..3699524expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0042538biological_processhyperosmotic salinity response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2532.1.S1_at--888--8071NONE
GGAGCTCTACGACTCGGACTCACCT
NONE
OsAffx.2532.1.S1_at--628--5851Chr02:3670377..3670401 (25 bp)
GACCACCACGGTCGTTGTATCACAT
LOC_Os02g07130
OsAffx.2532.1.S1_at--922--6893Chr03:9382658..9382682 (25 bp)
GTATCACATGCCAAGGGCTCCAATT
LOC_Os03g16910
OsAffx.2532.1.S1_at--1138--3151Chr02:3670340..3670364 (25 bp)
AATTCCAGCGCTGCCTGCAAGTGTG
LOC_Os02g07130
OsAffx.2532.1.S1_at--951--7571Chr02:3670293..3670317 (25 bp)
GGGCGTGTGGTTCTTCTTCACCCAC
LOC_Os02g07130
OsAffx.2532.1.S1_at--634--2052Chr08:573082..573106 (25 bp)
ACTTCAAGCCGGTCATGTTGGCTGA
NONE
OsAffx.2532.1.S1_at--918--491Chr02:3670031..3670055 (25 bp)
ATCGGCAGGAGAAGGGATCCCTCCC
LOC_Os02g07130
OsAffx.2532.1.S1_at--379--4331Chr02:3669986..3670010 (25 bp)
CCATCTTCTTGGTCCGCGACGAGAA
LOC_Os02g07130
OsAffx.2532.1.S1_at--189--1691Chr02:3669959..3669983 (25 bp)
AGCCTACGGGCTGGGATGATCCGAA
LOC_Os02g07130
OsAffx.2532.1.S1_at--685--7991Chr02:3669946..3669970 (25 bp)
GGATGATCCGAAGGCGTCAGCACCG
LOC_Os02g07130
OsAffx.2532.1.S1_at--287--971Chr02:3669917..3669941 (25 bp)
AGGAGCCAGCCTTCATGGTGTCGAG
LOC_Os02g07130
Target Sequence 
GGAGCTCTACGACTCGGACTCACCTGCTGCCACCAGCGTATCCCCTGCCCCGGCAGCGGCGACCACCACGGTCGTTGTAT
CACATGCCAAGGGCTCCAATTCCAGCGCTGCCTGCAAGTGTGTGAAGAGGAATGATACCATATGGGGCGTGTGGTTCTTC
TTCACCCACTACTTCAAGCCGGTCATGTTGGCTGACAAGAACGGAAAGGCGAAGGCCCCCACCGCCGTGGGAACGCACGA
CATGGAGAACATGTATATGTGGGTGTTCAAGGAGCGGCCAGAGAATGCCCGGGGAAGATGTACATGTGGGGAAGATGCCG
TCGCCGCCGCTCCTCCTCATCTCGCCCCTGCCGGCCTACTCCGACACCCGGATCGGCAGGAGAAGGGATCCCTCCCCGGC
CGCCGCCGCTCCTCATCCATCTTCTTGGTCCGCGACGAGAAGGAGCCTACGGGCTGGGATGATCCGAAGGCGTCAGCACC
GGAGGAGGAGCCAGCCTTCATGGTGTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis