Browse Element(s) Details


OsAffx.2533.1.S1_at

Description tigr:9630.m00654
TID=OsAffx.2533.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0714011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07100Os.47463.1.S1_x_at6/112+3647845..3650789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07100Os.14491.2.S1_x_at5/112+3647845..3650789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07110NANA2+3655345..3655722Auxin responsive protein
LOC_Os02g07120Os.17204.1.S1_at11/112+3659130..3669320HEAT repeat family protein, expressed
LOC_Os02g07130OsAffx.2532.1.S1_at10/112+3669874..3670702hypothetical protein
LOC_Os02g07140OsAffx.2533.1.S1_at11/112+3673312..3673617hypothetical protein
LOC_Os02g07150Os.54746.1.S1_at11/112+3674672..3677959Urease accessory protein F, putative, expressed
LOC_Os02g07160Os.11995.1.S1_at10/112+3677463..36799484-hydroxyphenylpyruvate dioxygenase, putative, expressed
LOC_Os02g07170Os.55501.1.S1_at11/112+3682189..3684123myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g07180Os.54315.1.S1_at11/112+3687916..3691301expressed protein
LOC_Os02g07190OsAffx.2534.1.S1_at11/112+3694689..3699524expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2533.1.S1_at--480--6791Chr02:3673563..3673587 (25 bp)
GTATATGTATACCTGGACGAAGTTG
LOC_Os02g07140
OsAffx.2533.1.S1_at--132--251Chr02:3673561..3673585 (25 bp)
ATATGTATACCTGGACGAAGTTGAG
LOC_Os02g07140
OsAffx.2533.1.S1_at--610--1851Chr02:3673547..3673571 (25 bp)
ACGAAGTTGAGCACGTCTATGACGG
LOC_Os02g07140
OsAffx.2533.1.S1_at--625--4091Chr02:3673546..3673570 (25 bp)
CGAAGTTGAGCACGTCTATGACGGC
LOC_Os02g07140
OsAffx.2533.1.S1_at--905--2811Chr02:3673544..3673568 (25 bp)
AAGTTGAGCACGTCTATGACGGCAG
LOC_Os02g07140
OsAffx.2533.1.S1_at--537--6651Chr02:3673542..3673566 (25 bp)
GTTGAGCACGTCTATGACGGCAGCG
LOC_Os02g07140
OsAffx.2533.1.S1_at--643--8911Chr02:3673540..3673564 (25 bp)
TGAGCACGTCTATGACGGCAGCGGC
LOC_Os02g07140
OsAffx.2533.1.S1_at--843--3371Chr02:3673468..3673492 (25 bp)
CAGCGCTGTACCCATCGGCGCGAAG
LOC_Os02g07140
OsAffx.2533.1.S1_at--124--1651Chr02:3673467..3673491 (25 bp)
AGCGCTGTACCCATCGGCGCGAAGC
LOC_Os02g07140
OsAffx.2533.1.S1_at--467--4692Chr05:23403186..23403488 (25 bp)
GCGGCGGTGGCAAGCACGGCGTCCA
NONE
OsAffx.2533.1.S1_at--79--3991Chr02:3673400..3673424 (25 bp)
CGGTGGCAAGCACGGCGTCCACGCG
LOC_Os02g07140
Target Sequence 
GTATATGTATACCTGGACGAAGTTGAGCACGTCTATGACGGCAGCGGCGGCGAGCACGGTGTCGGCGCAGCCGGCGTTGG
CGTCGGCCGCAGCGGCAGCGCTGTACCCATCGGCGCGAAGCCGTGGGTGGTCCAGCAGCAGCAGCCGACCGCAACCGCGG
CGGCGGTGGCAAGCACGGCGTCCACGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis