Browse Element(s) Details


OsAffx.25336.1.S1_at

Description tigr:9631.m03154
TID=OsAffx.25336.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3224011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32200NANA3+18378080..18378877hypothetical protein
LOC_Os03g32210NANA3+18381215..18383064hypothetical protein
LOC_Os03g32220Os.55921.1.S1_at11/113+18385327..18386131Zinc finger, C2H2 type family protein, expressed
LOC_Os03g32230Os.50970.1.S1_at11/113+18390892..18391988Zinc finger, C2H2 type family protein, expressed
LOC_Os03g32240OsAffx.25336.1.S1_at11/113+18395746..18397416hypothetical protein
LOC_Os03g32250OsAffx.3387.1.S1_at11/113+18399271..18400005expressed protein
LOC_Os03g32260OsAffx.13154.1.S1_x_at11/113+18401290..18401888hypothetical protein
LOC_Os03g32260OsAffx.13154.1.S1_at10/113+18401290..18401888hypothetical protein
LOC_Os03g32260OsAffx.21755.1.S1_x_at1/113+18401290..18401888hypothetical protein
LOC_Os03g32270Os.53091.1.S1_at11/113+18405946..18411214hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g32270Os.12141.1.S1_at11/113+18405946..18411214hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25336.1.S1_at--857--7591Chr03:18397360..18397384 (25 bp)
GGGCAGCGGCTGTGCATCCCTTCCG
LOC_Os03g32240
OsAffx.25336.1.S1_at--129--5651Chr03:18397296..18397320 (25 bp)
GACAGCGGCAATGGCCACGTCCTCC
LOC_Os03g32240
OsAffx.25336.1.S1_at--594--9491Chr03:18397191..18397215 (25 bp)
TCTCCATCCGCCGATGGCAGCAGGG
LOC_Os03g32240
OsAffx.25336.1.S1_at--918--8191Chr03:18397162..18397186 (25 bp)
GGAAGGACGCCGACACCATGTGTTC
LOC_Os03g32240
OsAffx.25336.1.S1_at--344--8111Chr03:18397158..18397182 (25 bp)
GGACGCCGACACCATGTGTTCAACA
LOC_Os03g32240
OsAffx.25336.1.S1_at--1160--5631Chr03:18397151..18397175 (25 bp)
GACACCATGTGTTCAACATCGTCCA
LOC_Os03g32240
OsAffx.25336.1.S1_at--110--7431Chr03:18397143..18397167 (25 bp)
GTGTTCAACATCGTCCATTGGAGCT
LOC_Os03g32240
OsAffx.25336.1.S1_at--421--511Chr03:18397134..18397158 (25 bp)
ATCGTCCATTGGAGCTTCAACGTCG
LOC_Os03g32240
OsAffx.25336.1.S1_at--334--9231Chr03:18397130..18397154 (25 bp)
TCCATTGGAGCTTCAACGTCGTGTT
LOC_Os03g32240
OsAffx.25336.1.S1_at--1055--11Chr03:18397127..18397151 (25 bp)
ATTGGAGCTTCAACGTCGTGTTCTT
LOC_Os03g32240
OsAffx.25336.1.S1_at--338--8071Chr03:18397124..18397148 (25 bp)
GGAGCTTCAACGTCGTGTTCTTGAT
LOC_Os03g32240
Target Sequence 
GGGCAGCGGCTGTGCATCCCTTCCGCCAGATCCGATGGGAGGGGAGGCTGCAGCCTTCATCGACGACAGCGGCAATGGCC
ACGTCCTCCCTTCCGCTAGATCTAGCGGGAGGGGAGGTGGCGGTGGCTACAATGGGAGGGGAGAAGGAGGCTCGCCCCTC
CTCTCCTCCTCTCCATCCGCCGATGGCAGCAGGGGTGGGGAAGGACGCCGACACCATGTGTTCAACATCGTCCATTGGAG
CTTCAACGTCGTGTTCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis