Browse Element(s) Details


OsAffx.25383.1.S1_at

Description tigr:9631.m03489
TID=OsAffx.25383.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3646011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36380NANA3+20126766..20128236hypothetical protein
LOC_Os03g36390NANA3+20130737..20131186retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36400NANA3+20131865..20132884retrotransposon protein, putative, LINE subclass
LOC_Os03g36420NANA3+20142119..20142391hypothetical protein
LOC_Os03g36439Os.13384.1.S1_at10/113+20142655..20149628F-box domain containing protein, expressed
LOC_Os03g36460OsAffx.25383.1.S1_at11/113+20150230..20150748hypothetical protein
LOC_Os03g36470OsAffx.20440.1.S1_x_at1/113+20156250..20159180retrotransposon protein, putative, unclassified
LOC_Os03g36470OsAffx.20440.2.S1_x_at1/113+20156250..20159180retrotransposon protein, putative, unclassified
LOC_Os03g36470OsAffx.8244.1.S1_at1/113+20156250..20159180retrotransposon protein, putative, unclassified
LOC_Os03g36470OsAffx.20628.1.S1_at1/113+20156250..20159180retrotransposon protein, putative, unclassified
LOC_Os03g36480NANA3+20159535..20161578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36490Os.51689.1.S1_at11/113+20164598..20166450retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g36500OsAffx.13199.1.S1_x_at11/113+20171316..20172853hypothetical protein
LOC_Os03g36500OsAffx.20098.1.S1_at1/113+20171316..20172853hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25383.1.S1_at--649--10511Chr03:20150296..20150320 (25 bp)
TTCACATGTCGATTTAGAGCCAGTC
LOC_Os03g36460
OsAffx.25383.1.S1_at--82--8711Chr03:20150302..20150326 (25 bp)
TGTCGATTTAGAGCCAGTCGGCGGC
LOC_Os03g36460
OsAffx.25383.1.S1_at--621--5871Chr03:20150351..20150375 (25 bp)
GAGCGTCATGGAACCCCACGGCGGC
LOC_Os03g36460
OsAffx.25383.1.S1_at--478--4671Chr03:20150380..20150404 (25 bp)
GCGGGTGAGGGACGTCGACAGCGAA
LOC_Os03g36460
OsAffx.25383.1.S1_at--339--3391Chr03:20150398..20150422 (25 bp)
CAGCGAAGGCGCTCTATGAGCAGGA
LOC_Os03g36460
OsAffx.25383.1.S1_at--511--951Chr03:20150424..20150448 (25 bp)
AGGAACTCGAGCGGATCGAGCAGCA
LOC_Os03g36460
OsAffx.25383.1.S1_at--1151--7291Chr03:20150460..20150484 (25 bp)
GTGCGGCGACCCTAGTGGCGCGAGT
LOC_Os03g36460
OsAffx.25383.1.S1_at--542--9371Chr03:20150515..20150539 (25 bp)
TCGAGCGATAGCTCCGGCAGCGTGC
LOC_Os03g36460
OsAffx.25383.1.S1_at--174--7812Chr03:20150604..20150628 (25 bp)
GGTCGAGGCCATTGAGTTCAGGCAT
LOC_Os03g36460
OsAffx.25383.1.S1_at--240--4332Chr03:20150612..20150636 (25 bp)
CCATTGAGTTCAGGCATGCGGCGAC
LOC_Os03g36460
OsAffx.25383.1.S1_at--426--5072Chr04:22882517..22882539 (23 bp)
GCAGCGGCAGCGAATCCCCGAGAGC
NONE
Target Sequence 
TTCACATGTCGATTTAGAGCCAGTCGGCGGCGAGCGCCACCTAGGGCGAGGGCGGGAGCGTCATGGAACCCCACGGCGGC
AGCGGCGGGTGAGGGACGTCGACAGCGAAGGCGCTCTATGAGCAGGAGAGGAACTCGAGCGGATCGAGCAGCAGCTCCGG
TGGCGTGCGGCGACCCTAGTGGCGCGAGTGGGGAGGGGGTGGAGGAGTGCGGAGGCGGGTCGAGCGATAGCTCCGGCAGC
GTGCGGCGACCGCAAGAGCCTCTGCAGGCAGCGCGCCTTGGCCACCTCCGCCACCACCGCATCCCCAAGGTCGAGGCCAT
TGAGTTCAGGCATGCGGCGACGAGCGCAGCGGCAGCGAATCCCCGAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis