Browse Element(s) Details


OsAffx.25393.1.S1_at

Description tigr:9631.m03553
TID=OsAffx.25393.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative cytochrome p450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3708011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37030NANA3+20484599..20485066hypothetical protein
LOC_Os03g37050OsAffx.10473.1.S1_at11/113+20500767..20502777transposon protein, putative, Mutator sub-class
LOC_Os03g37060OsAffx.22702.1.S1_at11/113+20503355..20504706transposon protein, putative, Mutator sub-class
LOC_Os03g37070OsAffx.10472.1.S1_at11/113+20505109..20505543Cytochrome P450 71E1, putative
LOC_Os03g37080OsAffx.25393.1.S1_at11/113+20506273..20512643Cytochrome P450 family protein
LOC_Os03g37080OsAffx.22701.1.S1_at7/113+20506273..20512643Cytochrome P450 family protein
LOC_Os03g37090Os.37371.1.S1_at10/113+20513407..20516312Uncharacterised protein family containing protein, expressed
LOC_Os03g37100Os.32970.1.S1_at11/113+20517953..20519695DTW domain containing protein, expressed
LOC_Os03g37110OsAffx.13205.1.S1_at10/113+20520864..20523154hypothetical protein
LOC_Os03g37120Os.33737.1.S1_at11/113+20523944..20527235transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g37130Os.2713.1.S1_at11/113+20528890..20533981Ser/Thr protein phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25393.1.S1_at--423--7591Chr03:20511888..20511912 (25 bp)
GGGCTTCACTAAGGACCATGTCAAG
LOC_Os03g37080
OsAffx.25393.1.S1_at--1018--751Chr03:20511905..20511925 (21 bp)
ATGTCAAGGCCATGCTCTTGGACAC
LOC_Os03g37080
OsAffx.25393.1.S1_at--586--9591Chr03:20512025..20512045 (21 bp)
TCTTGGACACATTCGTCGGTGGCAT
LOC_Os03g37080
OsAffx.25393.1.S1_at--824--10731Chr03:20512065..20512089 (25 bp)
TTGCACTGGGCAATGTCCGAGCTCA
LOC_Os03g37080
OsAffx.25393.1.S1_at--645--5911Chr03:20512083..20512107 (25 bp)
GAGCTCATCCGCAATCCGAGGGTGA
LOC_Os03g37080
OsAffx.25393.1.S1_at--747--7771Chr03:20512157..20512181 (25 bp)
GGTGCAGCACCACGACATGCCAAAG
LOC_Os03g37080
OsAffx.25393.1.S1_at--347--1351Chr03:20512255..20512279 (25 bp)
AGACCACACGGCACTTCAAGGTTGG
LOC_Os03g37080
OsAffx.25393.1.S1_at--996--191Chr03:20512417..20512441 (25 bp)
ATTTCGAGCTGGTGCCATTTGGCTC
LOC_Os03g37080
OsAffx.25393.1.S1_at--471--6131Chr03:20512474..20512498 (25 bp)
GAGTGGCCAACATCGAGTTCATCTT
LOC_Os03g37080
OsAffx.25393.1.S1_at--427--3531Chr03:20512505..20512529 (25 bp)
CATGCTTTTTTGCTTCGATTGGGAG
LOC_Os03g37080
OsAffx.25393.1.S1_at--1143--911Chr03:20512570..20512594 (25 bp)
AGGCAGGGAAGCTGACGTTCCACAA
LOC_Os03g37080
Target Sequence 
GGGCTTCACTAAGGACCATGTCAAGGCCATGCTCTTGGACACATTCGTCGGTGGCATCACCACTACCTCAGTGACCTTGC
ACTGGGCAATGTCCGAGCTCATCCGCAATCCGAGGGTGATGAAGAAGGCACAAGACGAGATTAGAGCCGTCGTAGGCGAG
AAGGAGCGGGTGCAGCACCACGACATGCCAAAGCTAAAGTACCTGAAGATGGTGGTGAAGGAGACCTTCCGCTTGCATCC
CCCCGCGACGCTACTCGTTCCCAGGGAGACCACACGGCACTTCAAGGTTGGCGGGGACCCGAACATCTGGAAAGATCCAG
AGGAGTTTATCCCAGAGAGGTTTGAGGAGATGGACATTGACTTCAACGGGGCACATTTCGAGCTGGTGCCATTTGGCTCT
GGCCGTCGGATTTGCCCGGGGCTGGCCATGGGAGTGGCCAACATCGAGTTCATCTTGGCAAGCATGCTTTTTTGCTTCGA
TTGGGAGCTTCCCCATGGGGTGAGGAAGGAGGATATCGACATGGAAGAGGCAGGGAAGCTGACGTTCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis