Browse Element(s) Details


OsAffx.25498.1.S1_at

Description tigr:9631.m04112
TID=OsAffx.25498.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative WD-40 domain protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4271011/11transducin family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42660NANA3+23719356..23722419retrotransposon protein, putative, unclassified
LOC_Os03g42670OsAffx.31222.1.S1_at9/113+23723193..23725536transposon protein, putative, unclassified
LOC_Os03g42690OsAffx.92.1.S1_at9/113+23728384..23732478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42690Os.47407.1.A1_at1/113+23728384..23732478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42700OsAffx.25497.1.S1_at11/113+23734469..23734778hypothetical protein
LOC_Os03g42710OsAffx.25498.1.S1_at11/113+23735539..23737020transducin family protein, putative
LOC_Os03g42720OsAffx.3493.1.S1_at11/113+23739610..23742050hypothetical protein
LOC_Os03g42730Os.46523.3.S1_x_at5/113+23743671..23745689hypothetical protein
LOC_Os03g42730Os.46523.1.S1_at4/113+23743671..23745689hypothetical protein
LOC_Os03g42740OsAffx.25499.1.S1_at11/113+23748704..23749653F-box family protein, putative
LOC_Os03g42750Os.17292.2.A1_s_at11/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42750Os.17292.1.S1_x_at10/113+23751455..23762616roothairless 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25498.1.S1_at--221--6191Chr03:23736484..23736508 (25 bp)
GAGGACGAGAGCGCAGTCACCGCCA
LOC_Os03g42710
OsAffx.25498.1.S1_at--607--7631Chr03:23736557..23736581 (25 bp)
GGGACGTGACCTACTGGCACTGGAT
LOC_Os03g42710
OsAffx.25498.1.S1_at--1013--8891Chr03:23736563..23736587 (25 bp)
TGACCTACTGGCACTGGATCGACGG
LOC_Os03g42710
OsAffx.25498.1.S1_at--788--6171Chr03:23736778..23736802 (25 bp)
GAGGAGGAGACATCATCGTGCAGCT
LOC_Os03g42710
OsAffx.25498.1.S1_at--240--1411Chr03:23736785..23736809 (25 bp)
AGACATCATCGTGCAGCTCCGACGG
LOC_Os03g42710
OsAffx.25498.1.S1_at--42--1631Chr03:23736832..23736856 (25 bp)
AGCGGCAGCCTCGACGGGTCAGTCA
LOC_Os03g42710
OsAffx.25498.1.S1_at--353--1671Chr03:23736838..23736862 (25 bp)
AGCCTCGACGGGTCAGTCAAGGTGT
LOC_Os03g42710
OsAffx.25498.1.S1_at--715--9731Chr03:23736854..23736878 (25 bp)
TCAAGGTGTGGCGAATCTCCGACAT
LOC_Os03g42710
OsAffx.25498.1.S1_at--541--7471Chr03:23736859..23736883 (25 bp)
GTGTGGCGAATCTCCGACATCGAAC
LOC_Os03g42710
OsAffx.25498.1.S1_at--1031--3051Chr03:23736867..23736891 (25 bp)
AATCTCCGACATCGAACCTACCAAT
LOC_Os03g42710
OsAffx.25498.1.S1_at--1035--4491Chr03:23736906..23736930 (25 bp)
GCCGTCGCCGCATGTATGGAAGAGA
LOC_Os03g42710
Target Sequence 
GAGGACGAGAGCGCAGTCACCGCCATCGCCGTCTCGGCCGAGGGCCGCGTCGTGTACGTCGGTTCGTCGGACGGGGACGT
GACCTACTGGCACTGGATCGACGGCGAGGCGAGGTACGGCGGCGCGCTCAGGGCGCACGGGACGGCGGTGATGTGCCTCG
CCGTCGCCGGGAACGTCGTCGTGAGCGGCTCGGCCGACCGGACGCTCTGCGCGTGGCGGCGCGGCGGCGGCGAGCACTCC
CGGCTCGCCGTGCTCGCCGGCCACACCGGCCCCGTCAAGTGCGTGGCCGTGGACGAGGAGGAGACATCATCGTGCAGCTC
CGACGGCGAGCGGCGGTTCGTGGTGTACAGCGGCAGCCTCGACGGGTCAGTCAAGGTGTGGCGAATCTCCGACATCGAAC
CTACCAATCCTCCGCCGCGGCTGCCGTCGCCGCATGTATGGAAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis