Browse Element(s) Details


OsAffx.25499.1.S1_at

Description tigr:9631.m04115
TID=OsAffx.25499.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4274011/11F-box family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42670OsAffx.31222.1.S1_at9/113+23723193..23725536transposon protein, putative, unclassified
LOC_Os03g42690OsAffx.92.1.S1_at9/113+23728384..23732478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42690Os.47407.1.A1_at1/113+23728384..23732478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42700OsAffx.25497.1.S1_at11/113+23734469..23734778hypothetical protein
LOC_Os03g42710OsAffx.25498.1.S1_at11/113+23735539..23737020transducin family protein, putative
LOC_Os03g42720OsAffx.3493.1.S1_at11/113+23739610..23742050hypothetical protein
LOC_Os03g42730Os.46523.3.S1_x_at5/113+23743671..23745689hypothetical protein
LOC_Os03g42730Os.46523.1.S1_at4/113+23743671..23745689hypothetical protein
LOC_Os03g42740OsAffx.25499.1.S1_at11/113+23748704..23749653F-box family protein, putative
LOC_Os03g42750Os.17292.2.A1_s_at11/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42750Os.17292.1.S1_x_at10/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42760Os.52288.1.S1_at11/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42760Os.26818.2.S1_at1/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42770Os.53974.1.S1_at11/113+23771935..23778523U3 snoRNP-associated, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25499.1.S1_at--850--10311Chr03:23749213..23749237 (25 bp)
TTTCATAGATCCTCGGTGGTTGATG
LOC_Os03g42740
OsAffx.25499.1.S1_at--230--10051Chr03:23749218..23749242 (25 bp)
TAGATCCTCGGTGGTTGATGGCTGC
LOC_Os03g42740
OsAffx.25499.1.S1_at--25--8891Chr03:23749233..23749257 (25 bp)
TGATGGCTGCGGTGTTGCTGGACCA
LOC_Os03g42740
OsAffx.25499.1.S1_at--100--6691Chr03:23749246..23749270 (25 bp)
GTTGCTGGACCATGGGACGATAACT
LOC_Os03g42740
OsAffx.25499.1.S1_at--1019--4311Chr03:23749255..23749279 (25 bp)
CCATGGGACGATAACTCCGGTGCTT
LOC_Os03g42740
OsAffx.25499.1.S1_at--351--6471Chr03:23749264..23749288 (25 bp)
GATAACTCCGGTGCTTGGTGGGTCC
LOC_Os03g42740
OsAffx.25499.1.S1_at--355--7771Chr03:23749273..23749297 (25 bp)
GGTGCTTGGTGGGTCCCACTCCACA
LOC_Os03g42740
OsAffx.25499.1.S1_at--1016--3211Chr03:23749350..23749374 (25 bp)
CAAGTGCGACTATCGCGCTGAGGGC
LOC_Os03g42740
OsAffx.25499.1.S1_at--762--2031Chr03:23749358..23749382 (25 bp)
ACTATCGCGCTGAGGGCGTCACCAA
LOC_Os03g42740
OsAffx.25499.1.S1_at--852--4011Chr03:23749455..23749479 (25 bp)
CGTCACCGATTACGGCGTCGTCGTG
LOC_Os03g42740
OsAffx.25499.1.S1_at--1156--9191Chr03:23749571..23749595 (25 bp)
TCCAACTCAAGGAGCTCTTCGTCAA
LOC_Os03g42740
Target Sequence 
TTTCATAGATCCTCGGTGGTTGATGGCTGCGGTGTTGCTGGACCATGGGACGATAACTCCGGTGCTTGGTGGGTCCCACT
CCACACCACGCTCCACGTGATCGTCGCCCGCTTCCCGACCGTCTCCAAGCTCGCCCTCAAGTGCGACTATCGCGCTGAGG
GCGTCACCAACCCCACGTTCGTGCTCCTCGTCGACCGCCTCGACCCGACCCTTCAACGACTCAAGCTCCGCTCCCTCCGC
CTCGTCACCGATTACGGCGTCGTCGTGCTCGCTGTCGCCGCCACTAGCCTCCGCAAGCTCTCCATCGCCTCATGCACCTT
TGGTGCCAAGGGGATCGAGGTCGTCCTCCGCTCCTACCTCCAACTCAAGGAGCTCTTCGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis