Browse Element(s) Details


OsAffx.25501.1.S1_at

Description tigr:9631.m04119
TID=OsAffx.25501.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative U3 small nucleolar ribonucleoprotein complex-associated protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4278011/11IBR domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42750Os.17292.2.A1_s_at11/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42750Os.17292.1.S1_x_at10/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42760Os.52288.1.S1_at11/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42760Os.26818.2.S1_at1/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42770Os.53974.1.S1_at11/113+23771935..23778523U3 snoRNP-associated, putative, expressed
LOC_Os03g42780OsAffx.25501.1.S1_x_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780OsAffx.25501.1.S1_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780Os.7529.1.S1_at1/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42790Os.50106.1.S1_at11/113+23790357..23793881IBR domain containing protein, expressed
LOC_Os03g42810OsAffx.13312.1.S1_s_at11/113+23803324..23806384Type I inositol-1,4,5-trisphosphate 5-phosphatase 11, putative, expressed
LOC_Os03g42820Os.8892.1.S1_at11/113+23809481..23816235LIM domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25501.1.S1_at--56--4591Chr03:23786461..23786485 (25 bp)
GCGCAAGGTGCTCCGGTACGCGCAC
LOC_Os03g42780
OsAffx.25501.1.S1_at--1005--9891Chr03:23786486..23786510 (25 bp)
TACTACGAGCGGTACAAGGCCCACG
LOC_Os03g42780
OsAffx.25501.1.S1_at--937--1851Chr03:23786490..23786514 (25 bp)
ACGAGCGGTACAAGGCCCACGGCGA
LOC_Os03g42780
OsAffx.25501.1.S1_at--1009--7791Chr03:23786496..23786520 (25 bp)
GGTACAAGGCCCACGGCGACTCGCG
LOC_Os03g42780
OsAffx.25501.1.S1_at--1051--8351Chr03:23786530..23786554 (25 bp)
GGCGGAGAAGCTGGGCCCGGCCATC
LOC_Os03g42780
OsAffx.25501.1.S1_at--1071--851Chr03:23786766..23786790 (25 bp)
AGGCGCTGTTCGAGGACCACCAGGA
LOC_Os03g42780
OsAffx.25501.1.S1_at--846--8471Chr03:23786793..23786817 (25 bp)
TGGCGGAGAGGCACGTGGAGAAGCT
LOC_Os03g42780
OsAffx.25501.1.S1_at--1137--7591Chr03:23786865..23786889 (25 bp)
GGGACGCGGCCCTGCGGCGGGCGAA
LOC_Os03g42780
OsAffx.25501.1.S1_at--254--1991Chr03:23786928..23786952 (25 bp)
ACTGCGGCGAGATGCACAAGTGCAT
LOC_Os03g42780
OsAffx.25501.1.S1_at--930--4331Chr03:23786970..23786994 (25 bp)
CCATGCTCGTGGAGCCCATGTCCAT
LOC_Os03g42780
OsAffx.25501.1.S1_at--1057--4511Chr03:23787006..23787030 (25 bp)
GCCGCGACGGCCCTATCAAGGCCAA
LOC_Os03g42780
Target Sequence 
GCGCAAGGTGCTCCGGTACGCGCACTACTACGAGCGGTACAAGGCCCACGGCGACTCGCGCAGGGCGGAGGCGGAGAAGC
TGGGCCCGGCCATCGAGGCGCGGGCTCGGCGGCTGCGCGAGGACCCCGACCCGGCCACGGCGCCGGCCAGCGGCGACGCC
GCCGAGGCGCTCGCCGCCGCGCACCGCGCGCTGCTCGCCTCCCGCGACGTCCTCTCGCGGTCCTACGCCTTCGCCTACCA
CATGTTCGGCGGCGAGGAGCGGACGTTGAAAGCGGCGGCGCCGGAGTCGGAGGTGGCGACGGCGCAGGCGCTGTTCGAGG
ACCACCAGGAGATGGCGGAGAGGCACGTGGAGAAGCTGTCGGGGCTGCTGGCGGCGGACGCGCCTCCGGCGCCGGCCACG
GCGGGGGACGCGGCCCTGCGGCGGGCGAAGCAGGACGCCGTGGCGCTCACCGCCGTGGTGGAGAAGCACTGCGGCGAGAT
GCACAAGTGCATCCAGGACGAGCTGCTGCCCATGCTCGTGGAGCCCATGTCCATCGCCGCCTACCGCCGCGACGGCCCTA
TCAAGGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis