Browse Element(s) Details


OsAffx.25545.1.S1_at

Description tigr:9631.m04340
TID=OsAffx.25545.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4486011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44830Os.18753.1.S1_at11/113+25233636..25240504expressed protein
LOC_Os03g44840Os.18926.1.S1_at11/113+25251861..25256081expressed protein
LOC_Os03g44850NANA3+25258466..25258900hypothetical protein
LOC_Os03g44860OsAffx.25545.1.S1_at11/113+25264911..25265282hypothetical protein
LOC_Os03g44870NANA3+25267520..25268561expressed protein
LOC_Os03g44880OsAffx.25546.1.S1_s_at11/113+25269898..25271593Germin-like protein subfamily 2 member 4 precursor, putative, expressed
LOC_Os03g44890Os.47315.1.S1_x_at11/113+25280727..25284264C2 domain-containing protein, putative, expressed
LOC_Os03g44890Os.47315.1.S2_x_at11/113+25280727..25284264C2 domain-containing protein, putative, expressed
LOC_Os03g44890OsAffx.30059.2.S1_x_at1/113+25280727..25284264C2 domain-containing protein, putative, expressed
LOC_Os03g44900Os.8777.1.S1_at11/113+25288519..25299205Not1 N-terminal domain, CCR4-Not complex component family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25545.1.S1_at--1158--10811Chr03:25264953..25264977 (25 bp)
TTGGAAGTGGGAGACTGGCGTCGGT
LOC_Os03g44860
OsAffx.25545.1.S1_at--1157--8351Chr03:25264969..25264993 (25 bp)
GGCGTCGGTGGCTGGAGGGCTATGG
LOC_Os03g44860
OsAffx.25545.1.S1_at--287--2671Chr03:25264995..25265019 (25 bp)
AAGCCGTGGGTGAAGGCGCTACAGT
LOC_Os03g44860
OsAffx.25545.1.S1_at--854--7351Chr03:25265004..25265028 (25 bp)
GTGAAGGCGCTACAGTGGCAGTGGG
LOC_Os03g44860
OsAffx.25545.1.S1_at--272--1371Chr03:25265069..25265093 (25 bp)
AGAGCTCGCAGCGACAGCGGACAGC
LOC_Os03g44860
OsAffx.25545.1.S1_at--33--3391Chr03:25265077..25265101 (25 bp)
CAGCGACAGCGGACAGCAACCAGGA
LOC_Os03g44860
OsAffx.25545.1.S1_at--121--2151Chr03:25265089..25265113 (25 bp)
ACAGCAACCAGGAGGCGCGGCGACA
LOC_Os03g44860
OsAffx.25545.1.S1_at--143--5751Chr03:25265129..25265153 (25 bp)
GACGGCGACTGCGACTGTGAGAGGA
LOC_Os03g44860
OsAffx.25545.1.S1_at--790--7991Chr03:25265151..25265175 (25 bp)
GGAGGCACGGATGACCACGGGCGGC
LOC_Os03g44860
OsAffx.25545.1.S1_at--276--8231Chr03:25265191..25265215 (25 bp)
GGCAGACGACCGCATTTTCCCAGTG
LOC_Os03g44860
OsAffx.25545.1.S1_at--852--1791Chr03:25265199..25265223 (25 bp)
ACCGCATTTTCCCAGTGCGGCAGCG
LOC_Os03g44860
Target Sequence 
TTGGAAGTGGGAGACTGGCGTCGGTGGCTGGAGGGCTATGGGAAGCCGTGGGTGAAGGCGCTACAGTGGCAGTGGGGATG
GCGGTGGTCGCTGGCAGAGGCTGCTCTGGCAGCGGCAGAGCTCGCAGCGACAGCGGACAGCAACCAGGAGGCGCGGCGAC
AGCTGGCAGAGCGGGCGACGGCGACTGCGACTGTGAGAGGAGGCACGGATGACCACGGGCGGCTAGCCGGGGAGGTGTGG
CAGACGACCGCATTTTCCCAGTGCGGCAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis