Browse Element(s) Details


OsAffx.25566.1.S1_at

Description tigr:9631.m04428
TID=OsAffx.25566.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4572011/11glyoxalase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45680NANA3+25729214..25731012retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g45690NANA3+25745066..25745896hypothetical protein
LOC_Os03g45700OsAffx.1197.1.S1_x_at4/113+25749851..25750207retrotransposon protein, putative, unclassified
LOC_Os03g45700OsAffx.9790.1.S1_x_at1/113+25749851..25750207retrotransposon protein, putative, unclassified
LOC_Os03g45710Os.26499.1.S1_at11/113+25754553..25755391ferredoxin family protein, expressed
LOC_Os03g45720OsAffx.25566.1.S1_at11/113+25755754..25758585glyoxalase family protein, expressed
LOC_Os03g45720Os.17364.1.S1_at11/113+25755754..25758585glyoxalase family protein, expressed
LOC_Os03g45730Os.14665.1.S1_at11/113+25759470..25764976Zinc knuckle family protein, expressed
LOC_Os03g45734OsAffx.7165.1.S1_at1/113+25774916..25776938retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004462molecular_functionlactoylglutathione lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25566.1.S1_at--1023--6371Chr03:25758133..25758157 (25 bp)
GATCCCAGAGGCTCCGGGTATTTAT
LOC_Os03g45720
OsAffx.25566.1.S1_at--39--6891Chr03:25758116..25758140 (25 bp)
GTATTTATTGATTCTGCTCCTGGGC
LOC_Os03g45720
OsAffx.25566.1.S1_at--740--4791Chr03:25758101..25758125 (25 bp)
GCTCCTGGGCGATTGATTGGCATTT
LOC_Os03g45720
OsAffx.25566.1.S1_at--16--5691Chr03:25758052..25758076 (25 bp)
GACATTCTGGTTACCTGTTGCAGCT
LOC_Os03g45720
OsAffx.25566.1.S1_at--785--1751Chr03:25758043..25758064 (22 bp)
ACCTGTTGCAGCTCTGTGGTAGACT
LOC_Os03g45720
OsAffx.25566.1.S1_at--476--5231Chr03:25757904..25757928 (25 bp)
GAATACAATTATGTGGCTCTCCTAG
LOC_Os03g45720
OsAffx.25566.1.S1_at--96--8331Chr03:25757890..25757914 (25 bp)
GGCTCTCCTAGATGTTCCGAAACAG
LOC_Os03g45720
OsAffx.25566.1.S1_at--384--411Chr03:25757852..25757876 (25 bp)
ATCAGTGGAATCACAGTGCCATGTT
LOC_Os03g45720
OsAffx.25566.1.S1_at--1014--4331Chr03:25757810..25757858 (25 bp)
CCATGTTTAGGCTTTTCTGGCAATG
LOC_Os03g45720
OsAffx.25566.1.S1_at--556--2951Chr03:25756257..25756281 (25 bp)
AATGGCCTAGAAGTTACAAGCTCAG
LOC_Os03g45720
OsAffx.25566.1.S1_at--765--1571Chr03:25756239..25756263 (25 bp)
AGCTCAGGCACAGGCGATATGTAAT
LOC_Os03g45720
Target Sequence 
GATCCCAGAGGCTCCGGGTATTTATTGATTCTGCTCCTGGGCGATTGATTGGCATTTGTGCTTGCAATGATGAGAAATTG
GGACATTCTGGTTACCTGTTGCAGCTCTGTGGTAGACTTGGGGTTCTTGATGGAAATTGGGAATACAATTATGTGGCTCT
CCTAGATGTTCCGAAACAGAATTATTGTGAGTATCAGTGGAATCACAGTGCCATGTTTAGGCTTTTCTGGCAATGGCCTA
GAAGTTACAAGCTCAGGCACAGGCGATATGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis