Browse Element(s) Details


OsAffx.25610.1.S1_s_at

Description tigr:9631.m04621
TID=OsAffx.25610.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4754011/11hypothetical protein
LOC_Os01g0510011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47480OsAffx.17242.1.S1_at3/113+26806770..26807924hypothetical protein
LOC_Os03g47480OsAffx.28616.1.S1_at2/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.37711.1.S1_at2/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.27980.1.S1_at1/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.37711.3.S1_x_at1/113+26806770..26807924hypothetical protein
LOC_Os03g47490OsAffx.25607.1.S1_at11/113+26808726..26811149hypothetical protein
LOC_Os03g47500Os.10547.1.S1_at11/113+26812209..26814172Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g47510OsAffx.25608.1.S1_at10/113+26817715..26821692hypothetical protein
LOC_Os03g47530NANA3+26827317..26828548Glycosyl transferase family 8 protein, expressed
LOC_Os03g47540OsAffx.25610.1.S1_at11/113+26831220..26834431hypothetical protein
LOC_Os03g47540OsAffx.25610.1.S1_s_at11/113+26831220..26834431hypothetical protein
LOC_Os03g47550Os.1799.1.S1_a_at11/113+26834905..26837463expressed protein
LOC_Os03g47560NANA3+26841183..26845572hypothetical protein
LOC_Os03g47564NANA3+26847452..26848026hypothetical protein
LOC_Os03g47570Os.52172.1.S1_at11/113+26849321..26852129retrotransposon, putative, centromere-specific
LOC_Os03g47570Os.52172.1.S1_x_at11/113+26849321..26852129retrotransposon, putative, centromere-specific
LOC_Os03g47574NANA3+26852696..26853007hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25610.1.S1_s_at--605--3932Chr03:26833976..26834000 (25 bp)
CGTGTCAACACAACCAAACCGAAGA
LOC_Os03g47540
OsAffx.25610.1.S1_s_at--133--3252Chr03:26833986..26834010 (25 bp)
CAACCAAACCGAAGACTGTAACATT
LOC_Os03g47540
OsAffx.25610.1.S1_s_at--341--5732Chr03:26833999..26834023 (25 bp)
GACTGTAACATTTGCGCCAATCTTA
LOC_Os03g47540
OsAffx.25610.1.S1_s_at--135--3532Chr03:26834007..26834031 (25 bp)
CATTTGCGCCAATCTTAGAACAGGG
LOC_Os03g47540
OsAffx.25610.1.S1_s_at--178--2472Chr03:26834077..26834101 (25 bp)
AACAGCAACCGAGATATTCAGTCAT
LOC_Os03g47540
OsAffx.25610.1.S1_s_at--414--6512Chr03:26834089..26834113 (25 bp)
GATATTCAGTCATGCATATGCTATA
LOC_Os03g47540
OsAffx.25610.1.S1_s_at--107--8892Chr03:26834119..26834143 (25 bp)
TGAGGCAGTCCTCAGGATGGTCTCT
LOC_Os03g47540
OsAffx.25610.1.S1_s_at--994--3452Chr03:26834124..26834148 (25 bp)
CAGTCCTCAGGATGGTCTCTATAAT
LOC_Os03g47540
OsAffx.25610.1.S1_s_at--580--3752Chr03:26834129..26834153 (25 bp)
CTCAGGATGGTCTCTATAATCCAAG
LOC_Os03g47540
OsAffx.25610.1.S1_s_at--1011--1312Chr03:26834322..26834346 (25 bp)
AGAGGCCTTTGGTACAGAGGGCAAA
LOC_Os03g47540
OsAffx.25610.1.S1_s_at--22--10552Chr03:26834356..26834380 (25 bp)
TTCTTGGTTTCTGCCAGAAAGGAGA
LOC_Os03g47540
Target Sequence 
CGTGTCAACACAACCAAACCGAAGACTGTAACATTTGCGCCAATCTTAGAACAGGGGGCAGAAACTGTAAAAAATGATTG
GCACAGAAAAGAACTGTGGGAAACAGCAACCGAGATATTCAGTCATGCATATGCTATAGTCTATGAGGCAGTCCTCAGGA
TGGTCTCTATAATCCAAGACGCAATGTTATCATATAATATTGGCAGAAGGCAAATGTTAGAGAAGATCATATCGTTCAAT
AGATACCTGATGCTGAAGCTGGCACCTGGAGAAGGTGATAAAGTACTCTCAAAAGTCATTACTGAGGCTGCCCTCGATAT
GTTTTATGCCTGGTGTGTGAATGTTGAGAGGCCTTTGGTACAGAGGGCAAAGGAAGTGTTTTCTTGGTTTCTGCCAGAAA
GGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25610.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis