Browse Element(s) Details


OsAffx.25616.1.S1_x_at

Description gb:NM_188710.1
DB_XREF= gi:34904503
GEN=OSJNBa0010K01.14
TID=OsAffx.25616.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0010K01.14 (OSJNBa0010K01.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g138605/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13810OsAffx.25616.2.S1_x_at11/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.3.S1_at11/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.5.S1_x_at10/111+7741045..7744548expressed protein
LOC_Os01g13810OsAffx.25616.2.S1_at8/111+7741045..7744548expressed protein
LOC_Os01g13820NANA1+7746206..7751216retrotransposon protein, putative, unclassified
LOC_Os01g13830OsAffx.11037.1.S1_s_at11/111+7752643..7757322expressed protein
LOC_Os01g13840Os.5139.2.S1_at1/111+7761235..7762836hypothetical protein
LOC_Os01g13840Os.5139.2.S1_x_at1/111+7761235..7762836hypothetical protein
LOC_Os01g13850OsAffx.23229.1.S1_at11/111+7763827..7764555hypothetical protein
LOC_Os01g13860OsAffx.25616.1.S1_x_at5/111+7768762..7771084hypothetical protein
LOC_Os01g13860OsAffx.25616.2.S1_x_at2/111+7768762..7771084hypothetical protein
LOC_Os01g13860OsAffx.25616.5.S1_x_at2/111+7768762..7771084hypothetical protein
LOC_Os01g13870NANA1+7772847..7774130expressed protein
LOC_Os01g13880OsAffx.11039.1.S1_at11/111+7777053..7777856hypothetical protein
LOC_Os01g13890NANA1+7779605..7785497retrotransposon protein, putative, unclassified
LOC_Os01g13900NANA1+7786120..7787373retrotransposon protein, putative, unclassified
LOC_Os01g13910OsAffx.11040.1.S1_at10/111+7788834..7791248hypothetical protein
LOC_Os01g13920OsAffx.22057.1.S1_at3/111+7793070..7793492hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25616.1.S1_x_at--360--2711Chr01:7769747..7769771 (25 bp)
AAGAACCCCGACATGGTGTACTTCT
LOC_Os01g13860
OsAffx.25616.1.S1_x_at--674--10551Chr01:7769768..7769792 (25 bp)
TTCTTCGTGAAGGACCAGCTCGTCG
LOC_Os01g13860
OsAffx.25616.1.S1_x_at--1118--5611Chr01:7769830..7769854 (25 bp)
GACACACAAGATGACCGTGCCGGAG
LOC_Os01g13860
OsAffx.25616.1.S1_x_at--262--5971Chr01:7769852..7769876 (25 bp)
GAGAACGCCCGTGTGTTTTCTTACG
LOC_Os01g13860
OsAffx.25616.1.S1_x_at--513--10371Chr01:7769867..7769891 (25 bp)
TTTTCTTACGGCCTTCTTCCAATGG
LOC_Os01g13860
OsAffx.25616.1.S1_x_at--478--4131NONE
CGCTCTCCGCAGCTGGTCGAAGCAG
NONE
OsAffx.25616.1.S1_x_at--1144--8251Chr01:7772047..7772071 (25 bp)
GGCAGCAGCAAAGCTCACGTTGCTA
NONE
OsAffx.25616.1.S1_x_at--1116--4012Chr01:7772064..7772088 (25 bp)
CGTTGCTACACGAGTCACGTCTCGC
NONE
OsAffx.25616.1.S1_x_at--127--9452Chr01:7772089..7772113 (25 bp)
TCGGCTCACGCACGCACGAATGCAG
NONE
OsAffx.25616.1.S1_x_at--1068--2011Chr01:7772411..7772435 (25 bp)
ACTACATGGTGGTCGAGTTCAAGCC
NONE
OsAffx.25616.1.S1_x_at--854--6751Chr01:7772427..7772451 (25 bp)
GTTCAAGCCAGTATTAGGCGACGAC
NONE
Target Sequence 
AAGAACCCCGACATGGTGTACTTCTTCGTGAAGGACCAGCTCGTCGGCGTCGACCTGCGCGCGAAGGAGGTCCTGGAGTA
CGAGACACACAAGATGACCGTGCCGGAGAACGCCCGTGTGTTTTCTTACGGCCTTCTTCCAATGGAGCTCCCGCCCGCGC
TCTCCGCAGCTGGTCGAAGCAGCGCGGCCGCTGGCGTGGCGGTGGTGCTGCCGCGCGCGACGTCCGACTCACGTACGCCG
ACTAGCTCGGCACGCCGGCAGCAGCAAAGCTCACGTTGCTACACGAGTCACGTCTCGCTCGGCTCACGCACGCACGAATG
CAGCGCGCCGCCGACGTCTCCCTCGAGCTCGCCGCGCGAGTCGGTGCTCACCGTGTCCCCGCGTGTCTCGCTCCGTCCTC
GCGCGCTCGACCCCTCCGCGGGGCTTGTCCTCGGCCCAGGAGGCGGGGGGAACTACATGGTGGTCGAGTTCAAGCCAGTA
TTAGGCGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25616.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis