Browse Element(s) Details


OsAffx.25620.1.S1_x_at

Description tigr:9631.m04687
TID=OsAffx.25620.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to T7N9.13
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4817011/11Isoamylase N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48140OsAffx.25619.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed
LOC_Os03g48140Os.10915.1.S1_at11/113+27323367..27336685unconventional myosin heavy chain, putative, expressed
LOC_Os03g48150Os.15951.1.S1_at2/113+27344213..27346915expressed protein
LOC_Os03g48150OsAffx.5018.1.S1_at1/113+27344213..27346915expressed protein
LOC_Os03g48160OsAffx.13401.1.S1_at10/113+27352532..27355617expressed protein
LOC_Os03g48170Os.20457.1.S1_at11/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48170OsAffx.25620.1.S1_x_at11/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48170OsAffx.25620.1.S1_at10/113+27357503..27362415Isoamylase N-terminal domain containing protein, expressed
LOC_Os03g48180Os.11525.1.S1_s_at11/113+27362672..27367943POT family protein, expressed
LOC_Os03g48190Os.52470.1.S1_at11/113+27381017..27385764expressed protein
LOC_Os03g48190OsAffx.13402.1.S1_at11/113+27381017..27385764expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25620.1.S1_x_at--620--5991Chr03:27360051..27360075 (25 bp)
GAGACGATATACATGCACGCCTTCA
LOC_Os03g48170
OsAffx.25620.1.S1_x_at--931--10231Chr03:27360079..27360103 (25 bp)
TTTGGAGTTGGATCTTACTGCCGCT
LOC_Os03g48170
OsAffx.25620.1.S1_x_at--1051--10471Chr03:27360093..27360117 (25 bp)
TTACTGCCGCTCTTCATACATTAAG
LOC_Os03g48170
OsAffx.25620.1.S1_x_at--1076--2971Chr03:27360711..27360735 (25 bp)
AATGGGCTCTCCGACGATTGGGAAT
LOC_Os03g48170
OsAffx.25620.1.S1_x_at--685--2771Chr03:27360766..27360790 (25 bp)
AAGAGCTGCGGTCAATCCGTGCAAA
LOC_Os03g48170
OsAffx.25620.1.S1_x_at--939--6111Chr03:27360969..27360993 (25 bp)
GAGTGAGCTCCGTACTGTTTATATT
LOC_Os03g48170
OsAffx.25620.1.S1_x_at--904--10231Chr03:27360990..27361014 (25 bp)
TATTGTGTGGTCTAATCCTGCTTCA
LOC_Os03g48170
OsAffx.25620.1.S1_x_at--906--5731Chr03:27361026..27361050 (25 bp)
GACTGGATCTTTTGATGGCTGGACA
LOC_Os03g48170
OsAffx.25620.1.S1_x_at--728--3231Chr03:27361847..27361867 (21 bp)
CAAGCCAGGCATTATTATTTTCATC
LOC_Os03g48170
OsAffx.25620.1.S1_x_at--715--171Chr03:27361859..27361883 (25 bp)
ATTTTCATCTCATCTGATAGCCCCT
LOC_Os03g48170
OsAffx.25620.1.S1_x_at--328--4191Chr03:27361880..27361904 (25 bp)
CCCTCTGCCTATTCTCCAGATTAAA
LOC_Os03g48170
Target Sequence 
GAGACGATATACATGCACGCCTTCAAAATTTGGAGTTGGATCTTACTGCCGCTCTTCATACATTAAGATCAAGATTCGAC
AAGGTTATATCAGATATGTCCGAAGGTGACGGAGCAAAAGCACCAAATGGGCTCTCCGACGATTGGGAATTTGAAGAGAC
CAAAGTAATGCAAGCTCAGGAAGAGCTGCGGTCAATCCGTGCAAAAATAGCAGTATTAGAAGGAAAGATGGCACTGGAGA
TAATTGAGAAGAACAAAATAATTGAAGAGAAACAAAGAAGGCTTGATGAAGCTGAGAAGGCCTTGAGTGAGCTCCGTACT
GTTTATATTGTGTGGTCTAATCCTGCTTCAGAGGTTCTATTGACTGGATCTTTTGATGGCTGGACAAGCCAGGCATTATT
ATTTTCATCTCATCTGATAGCCCCTCTGCCTATTCTCCAGATTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25620.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis