Browse Element(s) Details


OsAffx.25704.1.S1_at

Description tigr:9631.m05255
TID=OsAffx.25704.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5358010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53524NANA3+30651092..30651400hypothetical protein
LOC_Os03g53530Os.25518.1.S1_at11/113+30651649..30655069WD-repeat protein 4, putative, expressed
LOC_Os03g53540Os.55059.1.S1_at11/113+30658237..30659145expressed protein
LOC_Os03g53550Os.31662.1.S1_at11/113+30661923..30663971retrotransposon protein, putative, unclassified, expressed
LOC_Os03g53560OsAffx.19542.3.S1_x_at6/113+30664021..30668243retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g53570NANA3+30669535..30670311retrotransposon protein, putative, unclassified
LOC_Os03g53580OsAffx.25704.1.S1_at10/113+30673727..30675773expressed protein
LOC_Os03g53590Os.11603.1.S1_at11/113+30677366..30683868expressed protein
LOC_Os03g53600Os.6095.1.S1_at11/113+30686876..30690666HTH DNA-binding protein, putative, expressed
LOC_Os03g53610NANA3+30691265..30692175Seed maturation protein
LOC_Os03g53620Os.55399.1.S1_at11/113+30693515..30694380Seed maturation protein, expressed
LOC_Os03g53630Os.10544.1.S2_at11/113+30698003..30706129acetyltransferase, GNAT family protein, expressed
LOC_Os03g53630Os.10544.1.S1_at10/113+30698003..30706129acetyltransferase, GNAT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25704.1.S1_at--1090--8531Chr03:30674475..30674499 (25 bp)
TGGAGCGGATGCTCGGGCAGCTCGT
LOC_Os03g53580
OsAffx.25704.1.S1_at--1129--7651Chr03:30674513..30674537 (25 bp)
GGGATCTCCAACTGCAGCTCGCACG
LOC_Os03g53580
OsAffx.25704.1.S1_at--516--1591Chr03:30674528..30674552 (25 bp)
AGCTCGCACGATTCCGTCTGGCAAT
LOC_Os03g53580
OsAffx.25704.1.S1_at--36--5091Chr03:30674533..30674557 (25 bp)
GCACGATTCCGTCTGGCAATTCGAG
LOC_Os03g53580
OsAffx.25704.1.S1_at--258--6591Chr03:30674537..30674560 (24 bp)
GATTCCGTCTGGCAATTCGAGCAGA
LOC_Os03g53580
OsAffx.25704.1.S1_at--340--10631Chr03:30674552..30674664 (25 bp)
TTCGAGCAGAATGATCAGCGCGTGT
LOC_Os03g53580
OsAffx.25704.1.S1_at--378--2991Chr03:30674649..30674673 (25 bp)
AATGATCAGCGCGTGTTCTACTGGC
LOC_Os03g53580
OsAffx.25704.1.S1_at--1037--1651Chr03:30674656..30674680 (25 bp)
AGCGCGTGTTCTACTGGCGCTGCGC
LOC_Os03g53580
OsAffx.25704.1.S1_at--533--2791NONE
AAGATCACCGAGTGGTCCGACGGGA
NONE
OsAffx.25704.1.S1_at--906--4071Chr03:30675535..30675559 (25 bp)
CGAGCAACGGCAGCTCGTGGAGCTA
LOC_Os03g53580
OsAffx.25704.1.S1_at--1145--3251Chr03:30675539..30675563 (25 bp)
CAACGGCAGCTCGTGGAGCTACGGT
LOC_Os03g53580
Target Sequence 
TGGAGCGGATGCTCGGGCAGCTCGTCGGCGGCGAGAAGGGGATCTCCAACTGCAGCTCGCACGATTCCGTCTGGCAATTC
GAGCAGAATGATCAGCGCGTGTTCTACTGGCGCTGCGCCGTGTACAAGTCGGCGGCGGAGGAGGTGACCGTGTGGGGGAG
CCCACTCCGCACCTCCGGCCTCCTCCCCCGCGCGCTCCCGGCACGGCACCTCACCATCCTCTCCGGCAAGATCACCGAGT
GGTCCGACGGGAGGGTGTGGCCGACGGTGAGGGCGAGCAACGGCAGCTCGTGGAGCTACGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis