Browse Element(s) Details


OsAffx.25715.1.S1_at

Description tigr:9631.m05356
TID=OsAffx.25715.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5497010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54930OsAffx.3609.1.S1_at11/113+31164464..31170865Leo1
LOC_Os03g54930Os.36267.1.S1_s_at1/113+31164464..31170865Leo1
LOC_Os03g54950Os.28943.1.S1_x_at2/113+31175400..31178099retrotransposon protein, putative, unclassified
LOC_Os03g54960NANA3+31178916..31184684retrotransposon protein, putative, unclassified
LOC_Os03g54970OsAffx.25715.1.S1_at10/113+31189616..31193242expressed protein
LOC_Os03g54980Os.2906.1.S1_at10/113+31194901..31198079UPF0139 protein, putative, expressed
LOC_Os03g54990NANA3+31208076..31208663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55000NANA3+31215407..31215985hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25715.1.S1_at--1116--1491Chr03:31190949..31190973 (25 bp)
AGCACATTTGTGTCTCAAGCTCAGA
LOC_Os03g54970
OsAffx.25715.1.S1_at--413--6331Chr03:31190899..31190923 (25 bp)
GATGCAGTACATACTTCCTGTTCTG
LOC_Os03g54970
OsAffx.25715.1.S1_at--744--3871Chr03:31190882..31190906 (25 bp)
CTGTTCTGCCAGATAGACTTCTTGC
LOC_Os03g54970
OsAffx.25715.1.S1_at--771--5131Chr03:31190856..31190880 (25 bp)
GCAAATGCTATTGATTCCTGTGAAA
LOC_Os03g54970
OsAffx.25715.1.S1_at--528--5551Chr03:31190835..31190859 (25 bp)
GAAACCATTGTATACCGCACTTCTC
LOC_Os03g54970
OsAffx.25715.1.S1_at--663--8931Chr03:31190797..31190821 (25 bp)
TGACGCATTTAACCCAGCTATATCT
LOC_Os03g54970
OsAffx.25715.1.S1_at--400--6011NONE
GAGAGCATGCCACAGAATCAGACTA
NONE
OsAffx.25715.1.S1_at--220--6011Chr03:31189929..31189953 (25 bp)
GAGAGGGCAACCACGTTTCAAGATT
LOC_Os03g54970
OsAffx.25715.1.S1_at--757--6511Chr03:31189887..31189911 (25 bp)
GATTTGGAGCGGTGGTCCATTCTCC
LOC_Os03g54970
OsAffx.25715.1.S1_at--458--3111Chr03:31189809..31189833 (25 bp)
AATATTAGACCCAAACCCTGCAGAT
LOC_Os03g54970
OsAffx.25715.1.S1_at--1049--351Chr03:31189786..31189810 (25 bp)
ATCAACCATCCGGAAGCATGCTGGG
LOC_Os03g54970
Target Sequence 
AGCACATTTGTGTCTCAAGCTCAGAAAAGACTTGCTTTCACAACTAAGCTGATGCAGTACATACTTCCTGTTCTGCCAGA
TAGACTTCTTGCAGCAAATGCTATTGATTCCTGTGAAACCATTGTATACCGCACTTCTCGACTGGCCCTTCCTGACGCAT
TTAACCCAGCTATATCTTCTGTCAGTGATGCAAATAACTTCATACCAACTGAGAGCATGCCACAGAATCAGACTAGCACT
TCTGAAAAGGAAGACGATAAACTTGTACCTGAAGTTCTGGAAACATTCACCATGAGAGCTGAGAGGGCAACCACGTTTCA
AGATTTGGCAACCGAGACACGGGATTTGGAGCGGTGGTCCATTCTCCACCATTTTATAAAGTTGCATAAATACTCTAGAT
TGCATGAGGATGATGTCTCGAATATTAGACCCAAACCCTGCAGATCAACCATCCGGAAGCATGCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis