Browse Element(s) Details


OsAffx.25719.1.S1_at

Description tigr:9631.m05407
TID=OsAffx.25719.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5544011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55400Os.55702.1.S1_at11/113+31456300..31457825expressed protein
LOC_Os03g55410Os.32471.1.S1_at11/113+31465668..31467190Peroxidase 51 precursor, putative, expressed
LOC_Os03g55420Os.11548.1.S1_at11/113+31469757..31472467Peroxidase 35 precursor, putative, expressed
LOC_Os03g55430Os.10390.1.S1_at11/113+31476797..31477784expressed protein
LOC_Os03g55440OsAffx.25719.1.S1_at11/113+31478415..31480076hypothetical protein
LOC_Os03g55450Os.17749.1.A1_at11/113+31481890..31483415expressed protein
LOC_Os03g55450Os.17749.2.S1_at10/113+31481890..31483415expressed protein
LOC_Os03g55460OsAffx.25720.1.S1_at11/113+31487190..31489692expressed protein
LOC_Os03g55470Os.13860.1.A1_at10/113+31492862..31497250expressed protein
LOC_Os03g55480NANA3+31501649..31502474hypothetical protein
LOC_Os03g55490Os.27816.1.S1_at11/113+31504991..31509412Casein kinase II, alpha chain, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25719.1.S1_at--488--6471Chr03:31479695..31479714 (20 bp)
GATAACTGTACTCTCAAAGCAGGAA
LOC_Os03g55440
OsAffx.25719.1.S1_at--637--4731Chr03:31479669..31479693 (25 bp)
GCTGTTTGGAATCGCTGTCTGGAAA
LOC_Os03g55440
OsAffx.25719.1.S1_at--729--531Chr03:31479525..31479683 (25 bp)
ATCGCTGTCTGGAAATGTCTTTGTT
LOC_Os03g55440
OsAffx.25719.1.S1_at--389--6751Chr03:31479503..31479527 (25 bp)
GTTATCCCCCGAAAGTTGAAGCTCA
LOC_Os03g55440
OsAffx.25719.1.S1_at--1084--5671Chr03:31479375..31479500 (25 bp)
GACTATGGTATTCAGCAAGGCCTTG
LOC_Os03g55440
OsAffx.25719.1.S1_at--761--3191Chr03:31479360..31479382 (23 bp)
CAAGGCCTTGCAGCGTTTGTGATTA
LOC_Os03g55440
OsAffx.25719.1.S1_at--14--4931Chr03:31479330..31479354 (25 bp)
GCTTCCAGTCGCAGCTGAACACAGA
LOC_Os03g55440
OsAffx.25719.1.S1_at--1056--5051Chr03:31479320..31479344 (25 bp)
GCAGCTGAACACAGACAAGTCTTTT
LOC_Os03g55440
OsAffx.25719.1.S1_at--510--1411Chr03:31479308..31479332 (25 bp)
AGACAAGTCTTTTTCATCTGAGAAT
LOC_Os03g55440
OsAffx.25719.1.S1_at--230--9912Chr12:5835352..5835372 (21 bp)
TACTAATATTATGGGTTTCTACGAA
NONE
OsAffx.25719.1.S1_at--735--2611Chr03:31478806..31478830 (25 bp)
AACCGGAACCAGACAGATCTTCTTT
LOC_Os03g55440
Target Sequence 
GATAACTGTACTCTCAAAGCAGGAAAGCTGTTTGGAATCGCTGTCTGGAAATGTCTTTGTTATCCCCCGAAAGTTGAAGC
TCATGGACTATGGTATTCAGCAAGGCCTTGCAGCGTTTGTGATTACTGCTGCTTCCAGTCGCAGCTGAACACAGACAAGT
CTTTTTCATCTGAGAATGTTTATCAAAATACTAATATTATGGGTTTCTACGAAACCGGAACCAGACAGATCTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis