Browse Element(s) Details


OsAffx.25737.1.S1_at

Description tigr:9631.m05552
TID=OsAffx.25737.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5670011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56676NANA3+32222755..32226996retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g56682NANA3+32227675..32228405hypothetical protein
LOC_Os03g56690OsAffx.10434.1.S1_at11/113+32230883..32231638hypothetical protein
LOC_Os03g56700OsAffx.25737.1.S1_at11/113+32246007..32247298expressed protein
LOC_Os03g56700OsAffx.25737.1.S1_x_at11/113+32246007..32247298expressed protein
LOC_Os03g56710OsAffx.25738.1.S1_at11/113+32252333..32255041hypothetical protein
LOC_Os03g56710OsAffx.25738.2.S1_x_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56710Os.26576.1.S1_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56710Os.26576.2.S1_x_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56714OsAffx.13510.1.S1_at11/113+32257582..32258325expressed protein
LOC_Os03g56720OsAffx.22657.1.S1_at7/113+32259268..32260244hypothetical protein
LOC_Os03g56724NANA3+32261045..32262136hypothetical protein
LOC_Os03g56730Os.26576.2.S1_x_at11/113+32264338..32265988expressed protein
LOC_Os03g56730Os.26576.1.S1_at10/113+32264338..32265988expressed protein
LOC_Os03g56740OsAffx.13512.1.S1_at11/113+32268118..32274016hypothetical protein
LOC_Os03g56740OsAffx.29281.1.S1_at1/113+32268118..32274016hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25737.1.S1_at--954--8451Chr03:32246359..32246383 (25 bp)
TGGCCATGCTGTGGGCGCTGCGGTA
LOC_Os03g56700
OsAffx.25737.1.S1_at--660--4771Chr03:32246375..32246399 (25 bp)
GCTGCGGTACAAGGCGGACACGGAG
LOC_Os03g56700
OsAffx.25737.1.S1_at--827--4771Chr03:32246441..32246465 (25 bp)
GCTGCTGCTCGGCAAGTGCGTCGCC
LOC_Os03g56700
OsAffx.25737.1.S1_at--916--7251Chr03:32246634..32246963 (25 bp)
GTCCTCGTGCTCACCAGAGGTAGTG
LOC_Os03g56700
OsAffx.25737.1.S1_at--35--7331Chr03:32246640..32246969 (25 bp)
GTGCTCACCAGAGGTAGTGATGTTC
LOC_Os03g56700
OsAffx.25737.1.S1_at--723--1711Chr03:32246953..32246975 (23 bp)
ACCAGAGGTAGTGATGTTCAGAATT
LOC_Os03g56700
OsAffx.25737.1.S1_at--1132--10511Chr03:32246967..32246991 (25 bp)
TTCAGAATTATTTACCTTGGGACAA
LOC_Os03g56700
OsAffx.25737.1.S1_at--738--2331Chr03:32247231..32247253 (23 bp)
AAAGATTGTAATGCACTACTACCAA
LOC_Os03g56700
OsAffx.25737.1.S1_at--231--7071Chr03:32247236..32247260 (25 bp)
GTAATGCACTACTACCAATCAGTTT
LOC_Os03g56700
OsAffx.25737.1.S1_at--230--9031Chr03:32247240..32247264 (25 bp)
TGCACTACTACCAATCAGTTTCAGG
LOC_Os03g56700
OsAffx.25737.1.S1_at--600--371Chr03:32247244..32247268 (25 bp)
CTACTACCAATCAGTTTCAGGACCT
LOC_Os03g56700
Target Sequence 
TGGCCATGCTGTGGGCGCTGCGGTACAAGGCGGACACGGAGGCGGTGCTGGAGCGGCTGCTGGCGCGGGAGCGGGAGGAC
GCGCTGCTGCTCGGCAAGTGCGTCGCCGAGCTCAAGCGGAAGGGGCTCGAGTTCGACCTCCTCAAGGAGGTGGACGCGCT
GCGCCGCGCCAAGAGCCTGCGCGTCGAGGCCAAGGGCGGCGCCGGCGGCGAGAGGCCCAAGCGCTGGGCGGCCAGGGACC
TCGCCGTCTTCCTCCTCTTCGGCGCCGCCTGCGGCGTCCTCGTGCTCACCAGAGGTAGTGATGTTCAGAATTATTTACCT
TGGGACAAGGATTTTTTGCTTGAACAAAAGATTGTAATGCACTACTACCAATCAGTTTCAGGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis