Browse Element(s) Details


OsAffx.25741.1.S1_at

Description tigr:9631.m05611
TID=OsAffx.25741.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5718011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57140Os.6875.1.S1_at11/113+32520911..32523519expressed protein
LOC_Os03g57160Os.24550.1.S1_at11/113+32530682..32537963expressed protein
LOC_Os03g57170Os.49156.1.S1_at10/113+32538196..32541150LEM3 family/CDC50 family protein, expressed
LOC_Os03g57180OsAffx.25741.1.S1_at11/113+32542335..32542706hypothetical protein
LOC_Os03g57190Os.19844.1.S1_at11/113+32553330..32557193TCP family transcription factor containing protein, expressed
LOC_Os03g57200Os.12200.1.S1_s_at11/113+32558178..32559224glutathione S-transferase GSTU1, putative, expressed
LOC_Os03g57210Os.9472.1.S1_at11/113+32563547..32566812expressed protein
LOC_Os03g57220Os.12394.1.S1_at10/113+32567478..32571470expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25741.1.S1_at--698--2511Chr03:32542365..32542389 (25 bp)
AACTTCACCAAGAGGATCGTTGGCG
LOC_Os03g57180
OsAffx.25741.1.S1_at--501--2791Chr03:32542374..32542398 (25 bp)
AAGAGGATCGTTGGCGTCAACCTCA
LOC_Os03g57180
OsAffx.25741.1.S1_at--774--691Chr03:32542428..32542452 (25 bp)
ATGATCCCGATGTTATCGAGCCACA
LOC_Os03g57180
OsAffx.25741.1.S1_at--1042--9351Chr03:32542443..32542467 (25 bp)
TCGAGCCACAAAGCGACGATCCATA
LOC_Os03g57180
OsAffx.25741.1.S1_at--221--2671Chr03:32542453..32542477 (25 bp)
AAGCGACGATCCATACCACTCAAAT
LOC_Os03g57180
OsAffx.25741.1.S1_at--345--311Chr03:32542465..32542489 (25 bp)
ATACCACTCAAATGCTCGTCACGCG
LOC_Os03g57180
OsAffx.25741.1.S1_at--597--7611Chr03:32542525..32542549 (25 bp)
GGGACTACGCTCTAACGTATCTGGG
LOC_Os03g57180
OsAffx.25741.1.S1_at--359--9511Chr03:32542535..32542559 (25 bp)
TCTAACGTATCTGGGCAAAATGGCA
LOC_Os03g57180
OsAffx.25741.1.S1_at--1078--4891Chr03:32542557..32542581 (25 bp)
GCAGTGGAAGAAAAACCCGCGGACA
LOC_Os03g57180
OsAffx.25741.1.S1_at--790--31Chr03:32542637..32542661 (25 bp)
ATTGTCGTCGCTCCCGTCGTGGAAG
LOC_Os03g57180
OsAffx.25741.1.S1_at--809--4131Chr03:32542645..32542669 (25 bp)
CGCTCCCGTCGTGGAAGATGATCAA
LOC_Os03g57180
Target Sequence 
AACTTCACCAAGAGGATCGTTGGCGTCAACCTCATCTACGACACCATCGACGAGTCCCTCTCCATGATCCCGATGTTATC
GAGCCACAAAGCGACGATCCATACCACTCAAATGCTCGTCACGCGCCGCCGTACCACCACCGCCATTGATGATGATGAAG
GGGACTACGCTCTAACGTATCTGGGCAAAATGGCAGTGGAAGAAAAACCCGCGGACAAGCCGGGGGACATGCCGGTGATC
AGCTGGCCAGATGTTGTCTACCAATGGCGGCCATTGTCGTCGCTCCCGTCGTGGAAGATGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis