Browse Element(s) Details


OsAffx.25833.1.S1_at

Description tigr:9632.m00108
TID=OsAffx.25833.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0204011/11truncated rp1-4 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02000Os.7584.1.S1_at11/114+608054..613392Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os04g02010OsAffx.25831.1.S1_at9/114+617964..618778hypothetical protein
LOC_Os04g02010OsAffx.25831.1.S1_x_at9/114+617964..618778hypothetical protein
LOC_Os04g02020OsAffx.13618.1.S1_at11/114+623838..624134hypothetical protein
LOC_Os04g02030OsAffx.25832.1.S1_at11/114+630343..633741NB-ARC domain containing protein
LOC_Os04g02040OsAffx.25833.1.S1_at11/114+634634..634948truncated rp1-4 protein, putative
LOC_Os04g02050Os.18856.1.S1_at9/114+636698..640221Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase 2, putative, expressed
LOC_Os04g02060OsAffx.25834.1.S1_at11/114+648010..648949hypothetical protein
LOC_Os04g02070Os.54121.1.S1_s_at11/114+651744..658081expressed protein
LOC_Os04g02070Os.54121.1.S2_s_at11/114+651744..658081expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25833.1.S1_at--848--7711Chr04:634882..634906 (25 bp)
GGGTGGCTGGCATCACCCATCACCG
LOC_Os04g02040
OsAffx.25833.1.S1_at--509--9671Chr04:634863..634887 (25 bp)
TCACCGCAAGGCTCTTCAACCATGG
LOC_Os04g02040
OsAffx.25833.1.S1_at--313--1791Chr04:634861..634885 (25 bp)
ACCGCAAGGCTCTTCAACCATGGCT
LOC_Os04g02040
OsAffx.25833.1.S1_at--279--9571Chr04:634830..634854 (25 bp)
TCTTCGGCTTCGACAAATCCGACAA
LOC_Os04g02040
OsAffx.25833.1.S1_at--681--4911Chr04:634824..634848 (25 bp)
GCTTCGACAAATCCGACAAGCTCAG
LOC_Os04g02040
OsAffx.25833.1.S1_at--590--1571Chr04:634806..634830 (25 bp)
AGCTCAGGGACCTGGAGTCCCGGAT
LOC_Os04g02040
OsAffx.25833.1.S1_at--679--3451Chr04:634802..634826 (25 bp)
CAGGGACCTGGAGTCCCGGATTCTC
LOC_Os04g02040
OsAffx.25833.1.S1_at--228--6091Chr04:634792..634816 (25 bp)
GAGTCCCGGATTCTCCCGCAGCTGG
LOC_Os04g02040
OsAffx.25833.1.S1_at--1115--1511Chr04:634731..634755 (25 bp)
AGCAGAAGCAGCTGACGACTGACAT
LOC_Os04g02040
OsAffx.25833.1.S1_at--128--2731Chr04:634726..634750 (25 bp)
AAGCAGCTGACGACTGACATGGAGC
LOC_Os04g02040
OsAffx.25833.1.S1_at--357--1611Chr04:634722..634746 (25 bp)
AGCTGACGACTGACATGGAGCAGTG
LOC_Os04g02040
Target Sequence 
GGGTGGCTGGCATCACCCATCACCGCAAGGCTCTTCAACCATGGCTTCTCCCTCTTCGGCTTCGACAAATCCGACAAGCT
CAGGGACCTGGAGTCCCGGATTCTCCCGCAGCTGGCGCTGCTGCTGGAGCACGCTGAGAGGATCCCTCCTGAGCAGAAGC
AGCTGACGACTGACATGGAGCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis