Browse Element(s) Details


OsAffx.25902.1.S1_at

Description tigr:9632.m00612
TID=OsAffx.25902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0699011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06920OsAffx.25901.1.S1_at11/114+3642315..3645048hypothetical protein
LOC_Os04g06930OsAffx.13700.1.S1_at11/114+3648821..3649744hypothetical protein
LOC_Os04g06940OsAffx.20369.1.S1_at5/114+3650044..3651084retrotransposon protein, putative, unclassified, expressed
LOC_Os04g06950NANA4+3653912..3654481transposon protein, putative, unclassified
LOC_Os04g06960NANA4+3655273..3657954retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g06970OsAffx.13701.1.S1_at11/114+3658788..3660363hypothetical protein
LOC_Os04g06980OsAffx.22947.2.S1_x_at3/114+3665832..3668308retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06980OsAffx.22947.3.S1_x_at2/114+3665832..3668308retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06990OsAffx.25902.1.S1_at11/114+3669264..3671306hypothetical protein
LOC_Os04g07060NANA4+3678811..3685533retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07050OsAffx.13702.1.S1_at11/114+3692186..3694559hypothetical protein
LOC_Os04g07050OsAffx.13703.1.S1_x_at1/114+3692186..3694559hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25902.1.S1_at--864--3091Chr04:3670710..3670734 (25 bp)
AATAGCTGGCATGGCGTAGAATTCC
LOC_Os04g06990
OsAffx.25902.1.S1_at--315--8891Chr04:3670799..3670823 (25 bp)
TGAGGATGAGCATGTGGGCCCAATC
LOC_Os04g06990
OsAffx.25902.1.S1_at--163--2531Chr04:3670836..3670860 (25 bp)
AACTACCTCATGTATCTTCTCGTCA
LOC_Os04g06990
OsAffx.25902.1.S1_at--253--2371Chr04:3670919..3670943 (25 bp)
AAACCTCGACGACATATGCCATGGC
LOC_Os04g06990
OsAffx.25902.1.S1_at--808--8451Chr04:3670940..3670964 (25 bp)
TGGCCAGCTTGATCCTTCAGACAAG
LOC_Os04g06990
OsAffx.25902.1.S1_at--525--1611Chr04:3670990..3671014 (25 bp)
AGCTGATTGGACGACATGGTGGCAC
LOC_Os04g06990
OsAffx.25902.1.S1_at--460--7731Chr04:3671007..3671031 (25 bp)
GGTGGCACCAGACCATATAAGCTAG
LOC_Os04g06990
OsAffx.25902.1.S1_at--132--2651Chr04:3671040..3671064 (25 bp)
AACCAGCTCGCAGACATCATATTAC
LOC_Os04g06990
OsAffx.25902.1.S1_at--986--5591Chr04:3671091..3671115 (25 bp)
GAAATTCCTCGCCTCAAGTATGCAC
LOC_Os04g06990
OsAffx.25902.1.S1_at--717--6511Chr04:3671160..3671184 (25 bp)
GATATTTTGTTCGACCTTTGGACAG
LOC_Os04g06990
OsAffx.25902.1.S1_at--327--3711Chr04:3671230..3671254 (25 bp)
CTAGGAATCTGAACACTGGCGGTGA
LOC_Os04g06990
Target Sequence 
AATAGCTGGCATGGCGTAGAATTCCACGAGAGCATCATATCCTGGCACATCGCCACTGAGCTTGTCCTTTTTAAACTCAA
TGCCAACTATGAGGATGAGCATGTGGGCCCAATCAGAGCTCTTTCCAACTACCTCATGTATCTTCTCGTCACCCGCCCTG
ACATGCTGCCTGGCCTTCCCCAAAACTGGTTGTACGAAATGACCTGCGAAAACCTCGACGACATATGCCATGGCCAGCTT
GATCCTTCAGACAAGAGTGGTGTCAGCGCGGTGCTCAAGAAGCTGATTGGACGACATGGTGGCACCAGACCATATAAGCT
AGACCAGACAAACCAGCTCGCAGACATCATATTACACTGGGAGAGTCGGGGTCACCAGCCTGAAATTCCTCGCCTCAAGT
ATGCACGCGAAATCGCTAAAATAGTATTGGAGCGTGAGGAAGATAAAAAGGATATTTTGTTCGACCTTTGGACAGATTTT
CTTATCTACGCTGCCAACCGATGCAACAGGGAATCGCATGCTAGGAATCTGAACACTGGCGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis