Browse Element(s) Details


OsAffx.25904.1.S1_at

Description tigr:9632.m00632
TID=OsAffx.25904.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0720011/11D-mannose binding lectin family protein
LOC_Os04g080005/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07160NANA4+3786839..3790171transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170Os.47463.1.S1_x_at4/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170Os.14491.2.S1_x_at4/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170OsAffx.13703.1.S1_x_at3/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170OsAffx.25916.1.S1_at2/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07170OsAffx.13720.1.S1_at1/114+3791567..3799924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07190OsAffx.13705.1.S1_at11/114+3805040..3806141hypothetical protein
LOC_Os04g07190OsAffx.25918.1.S1_at2/114+3805040..3806141hypothetical protein
LOC_Os04g07200OsAffx.25904.1.S1_at11/114+3811029..3813437D-mannose binding lectin family protein
LOC_Os04g07210OsAffx.13706.1.S1_at11/114+3814553..3815179hypothetical protein
LOC_Os04g07220OsAffx.25905.1.S1_at10/114+3815595..3816837hypothetical protein
LOC_Os04g07230NANA4+3823207..3824428retrotransposon protein, putative, unclassified
LOC_Os04g07240OsAffx.3761.1.S1_x_at2/114+3828415..3831227hypothetical protein
LOC_Os04g07250OsAffx.25903.4.S1_at11/114+3834749..3836797hypothetical protein
LOC_Os04g07250OsAffx.25903.5.S1_s_at11/114+3834749..3836797hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25904.1.S1_at--427--5352Chr04:4255668..4255692 (25 bp)
GAAGATGCTTGATGGTGCACGCCAA
LOC_Os04g08000
OsAffx.25904.1.S1_at--142--9651Chr04:3812605..3812793 (25 bp)
TCAGGGCTGAGCAATGGTACAATTC
LOC_Os04g07200
OsAffx.25904.1.S1_at--207--7632Chr04:4256035..4256059 (25 bp)
GGGACTTCAGTCGAGTTCTAACAAC
LOC_Os04g08000
OsAffx.25904.1.S1_at--406--8191Chr04:3813096..3813120 (25 bp)
GGAAGACGGAACACACTCAATGAAT
LOC_Os04g07200
OsAffx.25904.1.S1_at--1081--6812Chr04:4256199..4256223 (25 bp)
GTTTATTTTCCTGTGCAAGCTGCGC
LOC_Os04g08000
OsAffx.25904.1.S1_at--318--5171Chr04:3813158..3813182 (25 bp)
GCAAGCTGCGCGTAATCTTTTAAAG
LOC_Os04g07200
OsAffx.25904.1.S1_at--571--6031Chr04:3813184..3813208 (25 bp)
GAGATGTGCGGAGTTTGCTCGATCA
LOC_Os04g07200
OsAffx.25904.1.S1_at--588--651Chr04:3813280..3813304 (25 bp)
ATGAAGACTTTAATCGACCGACAAT
LOC_Os04g07200
OsAffx.25904.1.S1_at--68--1911Chr04:3813310..3813334 (25 bp)
ACGTGGTTCAGGTGCTAGAAGGTCT
LOC_Os04g07200
OsAffx.25904.1.S1_at--1119--10052Chr04:4256389..4256413 (25 bp)
TAGTAGAACCTGACATGCCCCAAGT
LOC_Os04g08000
OsAffx.25904.1.S1_at--761--5652Chr04:4256400..4256424 (25 bp)
GACATGCCCCAAGTGACAAGATTAC
LOC_Os04g08000
Target Sequence 
GAAGATGCTTGATGGTGCACGCCAAGGGGAGAAACAGTTCAGGGCTGAGCAATGGTACAATTCTGAATTGGAGTACAAGG
TGAGACTTGGAATGGCAAAACTGCTAGCAAGGGACTTCAGTCGAGTTCTAACAACAATGAGGGGAACCATAGGGTATCTT
GCACCTGAATGGATTAGTGGATTAGCAATTACACAAAAGGTTGATGTCTATAGTTATGGAATGGTATTGTTGGAAATCAT
ATCAGGAAGACGGAACACACTCAATGAATGTAAAAGCAGTGGTGATCAGACTGTTTATTTTCCTGTGCAAGCTGCGCGTA
ATCTTTTAAAGGGAGATGTGCGGAGTTTGCTCGATCACCAATTAAAAGGTGATATCAACATGGAGGAGGTTGAAAGAGCT
TGCAAGGTTGCATGTTGGTGCATTCAAGATGAAGACTTTAATCGACCGACAATGGGTGACGTGGTTCAGGTGCTAGAAGG
TCTAGTAGAACCTGACATGCCCCAAGTGACAAGATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis